Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SHPRH_0009300

Sequence Length

302 nt

GC Content

0.4338

CACCUACCACCACCCGGGGUCUCUGGGCAAUAAGUGAGACAGAGCGAUCUAUGAAAGCAAUACUAUCAUUUGCAAAAUCACAUAGGUUUGAUGUUGAAUUUGUUGAUGAAGGAAGCACUUCAAUGGAUCUCUUUGAAGCAUGGAAGAAGGAAUAUAAGUUGCUUCAUGAAUAUUGGAUGGCUCUGAGGAAUCGUGUGUCUGCUGUUGAUGAACUUGCAAUGGCUACAGAACGACUAAGAGUGCGUGAUCCUAGGGAGCCAAAGCCUAAUCCGCCUGUUCUUCAUAUCAUUGAACCACAUGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-69.70 kcal/mol

Ensemble Metrics

Free Energy: -77.98

Frequency: 0.0000

Diversity: 71.39

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((...........))))((((((.((((..(((((((((.((((((((((((.((....((.(((((.(((((.((((((.......))).))).))))).)))))))...))..))).)))))))((..(((((((...................))))))).)).....((.(((((((.((((.((((((.(((...((((........((....)).......))))..)))..))))))))))..)))))))...))......)))))))..))))...))))..)))...)))

Thermodynamic Ensemble Prediction

.(((,.{,.......)))))((((((,((((..(((((((((.(((((((((({(.({....((.(((((.(((((.((((((.......)))}})).))))).))))),),..}}.,))},})))))),|..{|{{{||..,..,,,,.,,,....,,)}))))}.},.....((,(((((((.((({,(((((({((({{,((((........{|},,}))..,,..,|}}|..}}),}))))))))))..)))))))...}}...},}))))))}},)))).,.))))..))},,.)))