Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SHPRH_0014200

Sequence Length

219 nt

GC Content

0.4749

AUGUGUUGGAAGAGGAUGAAGAUGAUCCGGAGAGUGAGCCAGAGGGACAAGACAUUGACGAGCUGUAUCACUUUGUGAAACAAACACAUCAGCAAGAAACGCAGUCCAUCCAAGUGGAUGUCCAGCAUCCUGCAUUGAUCCCUGUGUUGAGACCCUACCAAAGAGAGGCUGUCAAUUGGAUGCUACAACAAGAGUGUUUCAGAAGCAGUCCUGCUACUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-56.30 kcal/mol

Ensemble Metrics

Free Energy: -59.87

Frequency: 0.0030

Diversity: 19.06

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((......((((.......))))(.(((((((..(((...(.(((....))).)...)))..))))))).)......)))))))(((...(((((((....(((((....)))))...(((((((...((((((.(((.(.((............)).).)))..)))))).))))))).........)))))))...((((....)))).)))

Thermodynamic Ensemble Prediction

(((((((,.....((((.......)))){.(((((((..(((...(.(((....))).)...)))..))))))).}....}.)))))))(((...(((((((.,,,((({{..,,))))}...(((((((...((((((.(((.(.((,.{......,,.)).).)))..)))))).))))))).........)))))))...((((....)))).)))