Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0002800

Sequence Length

250 nt

GC Content

0.3720

AUUAUCUAAUUUGUUGGCAAAAAAUUUAUAACAACAAAAAGGGGAAACAACUGGAAUGUCCAUCAUCUGAUAUGUGAUAAGCAAAAUGUGGUAUAUCCAUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCUUGGAGCAGCAGGGCACCCUGGCAUGAUGCCUCAUCAACAGCCCCCUCCCUACCCUCUGAUGCACCACCAGAUGCCACCACCUCAUCCACCCCAGCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-31.50 kcal/mol

Ensemble Metrics

Free Energy: -35.85

Frequency: 0.0009

Diversity: 54.06

Structure Visualization

Structure Prediction

MFE Structure Prediction

(...)((..(((((((...............)))))))..((((.......((((.((.....((((((..(((.((((.((........)).)))))))....................................................(((.(((.(((((......(((.(((((...)))))...)))...........))))).))).))).)))))).........))))))))))....))

Thermodynamic Ensemble Prediction

{...}{{..{((((((...............))))))}..((((.......((({.,({..,.((((((..,{({{|{,.||,....{{{|,.,,})))}....................................................{((,(((.,((((......(((.(((((...)))))...))).........,,)}})).})).))}.))))))...........}}}}))))....))