Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0004100

Sequence Length

188 nt

GC Content

0.4362

AAGGAGCUGAAGAGGAAAAAAUGGAAGCCGACCCUGAUGGUCAGCAGCCUGAAAAGCACUAGCAUCCUAUCCUUCCCUGUGGGAAGCAAAGCUAUGAAUGUUUUUCUACUGAUGAUUUCCACACAGAAUUCUUGUGAAAAUUGAGAGAAGUAUGGCAUAUGCCUGGCACAGUGUCUAGCACAUACAUA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-36.40 kcal/mol

Ensemble Metrics

Free Energy: -40.85

Frequency: 0.0007

Diversity: 48.43

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((((((.....(.......((..((.((((.....)))).))..)).......)..)))).))))...((((((...))))))....((((((....((((((.......(((((.((((.((....)))))).)))))))))))..))))))...(((..((((...))))..)))........

Thermodynamic Ensemble Prediction

.((((((({..,.,,.......((..((.((((.....)))).))..)).......}.})))).))))...((((((...)))))).,.,((,,.{...,||||(({.{{..,{((((.((((.((....}))))).))))),)))))}{{||(||.,.,((,,({{,,,,,))}..))}}}}}}...