Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0004900

Sequence Length

458 nt

GC Content

0.4236

GAGCUGAAGAGGAAAAAAUGGAAGCCGACCCUGAUGGUCAGCAGCCUGAAAAGGCAGAAAAUAAAGUGGAAAAUGAAACGGAUGAAGGUGAUAAAGCACAAGAUGGAGAAAAUGAAAAAAAUAGUGAAAAGGAACAGGAUAGUGAAGUGAGUGAGGAUACCAAAUCAGAAGAAAAGGAGACUGAAGAGAACAAAGAACUCACUGAUACAUGUAAAGAAAGAGAAAGUGAUACUGGGAAGAAGAAAGUAGAACAUGAAAUUUCCGAAGGAAAUGUUGCCACAGCCGCAGCAGCUGCUCUUGCCUCAGCGGCUACCAAAGCCAAGCACCUGGCUGCAGUGGAAGAAAGAAAGAUCAAGUCCCUGGUAGCUCUCUUGGUUGAGACACAAAUGAAGAAACUAGAGAUCAAACUUCGACAUUUUGAAGAGCUGGAAACUAUCAUGGACAGAGAGAAAGAAGCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-85.40 kcal/mol

Ensemble Metrics

Free Energy: -92.34

Frequency: 0.0000

Diversity: 98.69

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((............(((.(((((...((((.(((.(((((((((......)))........(((.........((........)).......)))........................((........))......(((.(((((((............((((............))))............)))))))..))).................((..((((...........))))..)).....((((((...))))))(((((.......))))).))))))...)))))))))))).))).(((((......))))).(((.(((.((........))...)))))).))))))((((.(((........))).))))..............((((((....))))))((((.....((.((.......)).)).....))))

Thermodynamic Ensemble Prediction

{{(({{.,,.,.......,{{.,(({(,,,{{{,.|||}{||,((((,...}||}..........{({,.........{........(({......)))....,...................{{........}}...,,.(((.(((((((............((((............))))............)))))))..))).},,.............((..((((...........))))..)).....((((((...)))))){||{|},,.,},}},})}}))})),,,}})))}}}}}||.|},.(((((......))))).||}}||..{.........||..{{||.|{{{{{,{((({{((((....,.....},....))))))))}.,...((((({....))))))..,}.....))}))).))}).,,.........}))