Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0005000

Sequence Length

882 nt

GC Content

0.4705

GCCCUGGAGAUGUACAAGGAUGAUUGGAACAAAGUGUCGGAACAUGUUGGAAGUCGUACUCAGGAUGAAUGCAUCCUCCACUUUUUGAGACUUCCCAUUGAGGACCCAUACCUUGAGAAUUCAGAUGCUUCCCUUGGGCCUUUGGCCUACCAGCCUGUCCCCUUCAGUCAGUCAGGAAAUCCAGUUAUGAGUACUGUUGCUUUUUUGGCAUCUGUGGUGGACCCUCGCGUGGCAUCUGCUGCAGCAAAAGCGGCUUUGGAGGAGUUUUCUCGGGUCCGGGAGGAGGUACCACUGGAAUUGGUUGAAGCUCAUGUCAAGAAAGUACAAGAAGCAGCACGAGCCUCUGGGAAAGUGGAUCCCACCUACGGUCUGGAGAGCAGCUGCAUUGCAGGCACAGGGCCCGAUGAGCCAGAGAAGCUUGAAGGAGCUGAAGAGGAAAAAAUGGAAGCCGACCCUGAUGGUCAGCAGCCUGAAAAGGCAGAAAAUAAAGUGGAAAAUGAAACGGAUGAAGGUGAUAAAGCACAAGAUGGAGAAAAUGAAAAAAAUAGUGAAAAGGAACAGGAUAGUGAAGUGAGUGAGGAUACCAAAUCAGAAGAAAAGGAGACUGAAGAGAACAAAGAACUCACUGAUACAUGUAAAGAAAGAGAAAGUGAUACUGGGAAGAAGAAAGUAGAACAUGAAAUUUCCGAAGGAAAUGUUGCCACAGCCGCAGCAGCUGCUCUUGCCUCAGCGGCUACCAAAGCCAAGCACCUGGCUGCAGUGGAAGAAAGAAAGAUCAAGUCCCUGGUAGCUCUCUUGGUUGAGACACAAAUGAAGAAACUAGAGAUCAAACUUCGACAUUUUGAAGAGCUGGAAACUAUCAUGGACAGAGAGAAAGAAGCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-227.90 kcal/mol

Ensemble Metrics

Free Energy: -243.12

Frequency: 0.0000

Diversity: 262.29

Structure Visualization

Structure Prediction

MFE Structure Prediction

...(((((..(.(.((((((((...((..(..((((............(((((((.((...((((((....))))))........)).)))))))))))..)..))))).)))))).).)))))..(((((...((((((...))))))(((((..((((((..(((...(((((((((..((((.......))))....)))))))))..))).)).))))....)).)))..(((((((((((....((((((((((..(((((((..(.(((((((..((.....)).)))).))).)..))))))).((((......).)))............((((.(((((.....(((((........))))).((((((((((((..(((.(((....((((((.....((.....(((((....))))).....))......)))..((.((((.....)))).)).((((....))))..........(((.........((........)).......)))........................((........))......(((.(((((((............((((............))))............)))))))..))).................((..((((...........))))..)).....((((((...))))))...)))...))))))))))))))))))..))))).)))).))))))))..)).....)))))))))))...............((((.((((((.(((((.((((....((....))....))))))))).....((((((....)))))).........)))))).)))).........))))).

Thermodynamic Ensemble Prediction

{{{((({{..,.,.{{{{{(((,{(.{..({..{{{{,.,,}}}}.}}|,,||||}}.,,.((((((....)))))).{{{{{{{{..,,,|||(({{{..{,.,..,|{||||,{...||||,..,,((({({((((((...))))),(((....,(((.(({((({{.,(((({,,...((((.......))))..{{{||||||||.{|,|{,|.||,|{{{.||,|||{.{((((((({{(....{{{{{(((({..(((((((,,(.(({((((..({.,,..||,||}},.}},|..}}}||||.{{{|......}.,,,.}..}},}},.,}|||.|{{{{..,||||.,})},}},.,}||}}||||||{,|||||..|||}|||..}}}}|}}.}}}})))}}}}}}))|}}}..))}))}}}}.))}.....)))..((.((((.....)))).)).((((....))))........,}}.}}}}..}},,.....}.}}}))}......},)..}}}}}.}},......,,,...,||,.......,},,.,,,(((.(((((((............((((............))))............)))))))..))).},,.............((..((((...........))))..)).....((((((...)))))){||{|,.,.}},))|))||||}|||||,{{|||||}}||,||,,||||{.,,...}}))),}}}))}|.,.........}}..{{{{.{{{{((,(((({{((((....,,....}}....))))))))}.,...((((({....))))))..,},,...))}))).)))).,}}}}..,),}))}