Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0005800

Sequence Length

290 nt

GC Content

0.4345

AAGAAAAGGAGACUGAAGAGAACAAAGAACUCACUGAUACAUGUAAAGAAAGAGAAAGUGAUACUGGGAAGAAGAAAGUAGAACAUGAAAUUUCCGAAGGAAAUGUUGCCACAGCCGCAGCAGCUGCUCUUGCCUCAGCGGCUACCAAAGCCAAGCACCUGGCUGCAGUGGAAGAAAGAAAGAUCAAGUCCCUGGUAGCUCUCUUGGUUGAGACACAAAUGAAGAAACUAGAGAUCAAACUUCGACAUUUUGAAGAGCUGGAAACUAUCAUGGACAGAGAGAAAGAAGCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-54.00 kcal/mol

Ensemble Metrics

Free Energy: -58.07

Frequency: 0.0014

Diversity: 55.31

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.....(((.((((...((...........((((((.....................((..((((...........))))..)).....((((((...))))))(((((.......)))))(((((((........))))))).....(((((......))))).))))))............)).)))))))..)(((((((((.(((.(........(((((...((((........((((((....))))))..))))...)).)))).))).)))))).....)))

Thermodynamic Ensemble Prediction

(.....(((.((((,,.............,{(((((.....................((..((((...........))))..)).....((((((...))))))(((((.......)))))(((((((........))))))).....(((((......))))).))))))............)).}))))))..)(((((((((.(((..........{{{,{...|{{{....,...((((({....))))))..})}}...}}.})}}.}}).)}))),....,)))