Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0009500

Sequence Length

250 nt

GC Content

0.2920

AUACUUGGCAUAUCGAAAUUUUAUGAUUGACACGUAUCGUCUAAACCCCCAAGAGUAUUUAACUAGCACUGCUUGUCGGAGGAACUUGACUGGAGAUGUGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAAAAUGUGGUAUAUCCAUACAAUGGAAUAUUACUUGGCUGUAAAAAGGAAUGAAGUGUUUACAUUUGCCACAUGAUGGAUGAAUUUUGAAACAUUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-30.10 kcal/mol

Ensemble Metrics

Free Energy: -34.56

Frequency: 0.0007

Diversity: 48.73

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((..((((.........)))).....(((((.(((((....(((((((((((.((.....)).))).))))..)).)).....)))..)).)))))..................................................(((.....(((((((.(((((...))))))))))))...)))......))).)).((((((((..((((((((.....))).)))))....)))))))).

Thermodynamic Ensemble Prediction

((.(((..{{,{{{,......,,})}},..(((((.(((((....((((({,((((,.,........},)}))),..)).)).....))).,),.)))))..................................................(((.....(((((((.(((((...)))))))))))).,.)))......}),.)).((((((((.,((({{(((.....))).))))}..,,)))))))).