Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0011300

Sequence Length

595 nt

GC Content

0.4941

GUUCCUGCUGCUCAACAGAUGCUAAAUUUUCCUGAGAAAAACAAGGAAAAACCAGUUGAUUUGCAGAACUUUGGUCUCCGUACUGACAUUUACUCCAAGAAAACAUUAGCAAAGAGUAAAGGUGCUAGUGCUGGAAGAGAAUGGACUGAACAGGAGACCCUUCUACUCCUGGAGGCCCUGGAGAUGUACAAGGAUGAUUGGAACAAAGUGUCGGAACAUGUUGGAAGUCGUACUCAGGAUGAAUGCAUCCUCCACUUUUUGAGACUUCCCAUUGAGGACCCAUACCUUGAGAAUUCAGAUGCUUCCCUUGGGCCUUUGGCCUACCAGCCUGUCCCCUUCAGUCAGUCAGGAAAUCCAGUUAUGAGUACUGUUGCUUUUUUGGCAUCUGUGGUGGACCCUCGCGUGGCAUCUGCUGCAGCAAAAGCGGCUUUGGAGGAGUUUUCUCGGGUCCGGGAGGAGGUACCACUGGAAUUGGUUGAAGCUCAUGUCAAGAAAGUACAAGAAGCAGCACGAGCCUCUGGGAAAGUGGAUCCCACCUACGGUCUGGAGAGCAGCUGCAUUGCAGGCACAGGGCCCGAUGAGCCAGAGAAGCUUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-175.80 kcal/mol

Ensemble Metrics

Free Energy: -187.50

Frequency: 0.0000

Diversity: 248.37

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((..((((((....(((((((((..(((((((..........)))))))..(((((.((((............(((((((((((.(((((((((..................))))))..))).)))))).)).))))))).)))))..((((((.........))))))(((((((.((.((.(((((((((((...((..(..((((............(((((((.((...((((((....))))))........)).)))))))))))..)..))))).)))))..........))).))))..))))))).(((......))).((((((..(((...(((((((((..((((.......))))....)))))))))..))).)).)))).......)))))))))..))))))..)))((((((....(.((((..(((((((((((.((.(((.(((((......(((((..((((.((((......).))).).)))..))...)))........)))))))))).)))...(((((.((.((....)).)).)))))...)))))))).)))))...))))))..

Thermodynamic Ensemble Prediction

((((.,(((((((.,((((({{(,..(((((((..........)))))))...{{{{..,,,,,,,,,,...{(((((({{.{.|.({(({.{(({,,{....{{{{{{{{..,,,,,...,}}})))))||))|.}.}}}}},,|,|.}|,||||}}}..,,,.||||||((((((({({.,,.{{,{,{{{(((,{{,{,.{,,.(({{,.{,,|,},,,(((((((.,....((((((....))))))........,}.))))))),,|{{,|{.,,.},.)))))}...|}},|.|}}|}|||,{||||||,.{({,,....}}|.{{{,.,,.|||,,.||||||,,,,}||||....,}})))},||||||||||||||}}||||{||||((((.{(.(({.,{{((({{..,....))})),.{,{{{({,..||}}|}|}}})}|},}},}}},}}})}}}}.,|||,,|,.}}|},||}}}},,,,)}},,.,.,))))}},},)))}}}||},..||||,.,|},},,...|||||.,|}||}}},||.}}}))|||...,})))},,.)}))|{|.....,)))