Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0017900

Sequence Length

448 nt

GC Content

0.3728

AUACUUGGCAUAUCGAAAUUUUAUGAUUGACACGUAUCGUCUAAACCCCCAAGAGUAUUUAACUAGCACUGCUUGUCGGAGGAACUUGACUGGAGAUGUGUGUGCUGUGAUGAGGUAAACUGUUUGACUUUUUCUGAGACAUUUAACUGUAGGAAUUUACUUAUGCAUGCUGUCUAAUGUUUGCUUGAUUAAACUGGUUGUUUCAACUGGGUAAAACACCUAAUUUUAGUUAUGCCAUUUAGGGGUUGAUUAUAUUUUGUUUCCUUUCAUUUCAUUCAAUUUAAUUAUUUUAUUUUUAUUCUAUUUUAUUAAUUUAAUUUUAUUGUCAAGAUGGGGUUUCACAGUGUUGCCAAGGCUGGUCUCGAUCUCCUGGCCUCAAGCGAUUCUCCUGCCUCCGCCUCCCGAAGUAUUGUGAUUGCAGGCAUGAGCACUGUGUUCAGCAUUAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-85.30 kcal/mol

Ensemble Metrics

Free Energy: -96.52

Frequency: 0.0000

Diversity: 143.40

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.((.((.((((........)))))).)).))))(.((((((((((((((((((.(((((((((((.((..(((..((........))...)))..))))))).((((.((((((((.(((.(((..((((((((........)).))))))................))).))))))))))).))))..(((((((...)))))))........(((((...............))))))))))).))).))))).................((((..(((((..(((.................)))..)))))..)))).......)))))).((((((((((((.(((((((..........)))))))...((((((....(((.((........)).)))....)))))).))))...))))))))........)))))

Thermodynamic Ensemble Prediction

((((.((.((.((((........)))))).)).))))(.((((({((((.{{{,((,..,,{{{(((((,((,{{((,,((........)},|||},},},))}}|,{(({.((((((((.{{,.{({....,,,,(({{{,....,,{{{{|.,..,.}}|},|,,.||.))}.,,,))))))}),)})},.{,(((((...))))}||{{.....}}}},....|})}}},}},.,},.)))))}||,.,......,,,.,,,,{{((({....((((..(((((..(((.................)))..)))))..))))...}))))))||,.((((((((((({.(((((((.........,)})))))...||||{||||.(((,{,.,,.,,.,|}.},,.,}.)),}))|)))}.,,))))))))...,,,.,)))))