Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0019400

Sequence Length

194 nt

GC Content

0.4536

CCAGUCAGAAGUCCAGAAAGAAGAGAUAGAAAAGCAUCAGCUAAUGCUCGAAAGAGGAAACAUUCGCCUUCGCCUCCCCCUCCGACACCAACAGAAUCACGGAAGAAGAGUGGGAAGAAAGGUAUUCAUGUGAUUGAACGGCGUGCUCUUCCUGAGUUCUUCAAUGGAAAAAACAAAUCCAAGACUCCAGAAAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-30.60 kcal/mol

Ensemble Metrics

Free Energy: -35.44

Frequency: 0.0004

Diversity: 55.32

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((...((((.((.((...((((((.......(((....)))..(.(((....))).).........((((.((((..(.((((...............)))).)..))).).))))..(.((.((((......))))..)).).)))))))))).))))....)))(.........................)

Thermodynamic Ensemble Prediction

,,({{{{(((.({{((...((((((.......(((,,..}}}..|,{{(....}}}.,....,}}{{((({.{{(({{,{((,,...{{..........,)),.,..))).)})),).,}}}|.,{((,,,...}}}}..))})})))))))))}.)))),,..|||(.........}}},.))}}.......,