Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0021800

Sequence Length

467 nt

GC Content

0.4368

CCAGUCAGAAGUCCAGAAAGAAGAGAUAGAAAAGCAUCAGCUAAUGCUCGAAAGAGGAAACAUUCGCCUUCGCCUCCCCCUCCGACACCAACAGAAUCACGGAAGAAGAGUGGGAAGAAAGGCCAAGCUAGCCUUUAUGGGAAGCGCAGAAGUCAGAAAGAGGAAGAUGAGCAAGAAGAUCUAACCAAGGAUAUGGAAGACCCAACACCUGUACCCAAUAUAGAAGAAGUAGUACUUCCCAAAAAUGUGAACCUAAAGAAAGAUAGUGAAAAUACACCUGUUAAAGGAGGAACUGUAGCGGAUCUAGAUGAGCAGGAUGAAGAAACAGUCACAGCAGGAGGAAAGGAAGAUGAAGAUCCUGCCAAAGGUGAUCAGAGUCGAUCAGUUGACCUUGGGGAAGAUAAUGUGACAGAGCAGACCAAUCACAUUAUUAUUCCUAGUUAUGCAUCAUGGUUUGAUUAUAACUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-94.50 kcal/mol

Ensemble Metrics

Free Energy: -103.66

Frequency: 0.0000

Diversity: 129.46

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((..((((........).))).....(((....)))..(.(((....))).)..((((..((((..(((((.(((((......(((((..(((((.........(((((((((((((.......)))))).((((..((.((....((........))...)).))...............(((...(((.....)))...)))...)))).................)))))))....)))))...............(((......))))))))...)))))..((((.(((..(((..((.......))..)))..).)).))))..))))).))))..)))).....(((.....)))(((((......))))).)))))..)))((((((((((((((..(.......)..)))))))))).))))((((((((.((((.....))))))))))))

Thermodynamic Ensemble Prediction

(..{(({{,.,(({........,.}}}.....(((,,..}},..|}||{....}||,,..{,{{,,{((({.((((,.(,((({...............}))}.,..))).),))}}((((((.......)))))).(((({{(.{(.....{{.......{|.{{{{..........})))..}}.,{{...(((.....)))...}||{{,.....,,,,,........}}.)))))))....}}}},..||...........(((......)))|||||,.{|,,,,..||,|}}|}},|||.}}}..}{{||||,..,..,}.}}},,.((((((....,,.....}.....))))))...,{|(((((......}})),.,},})}}||((((,((((((((((..(.......)..)))))))))).))))}|{(((((.((((.....))))))))))))