Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0024300

Sequence Length

465 nt

GC Content

0.4688

UAUGUUCAUGCGGAUGCUCCUACCAAUAAAACACUGGCUGGGCUGGUGGUGCAGCUUCUUCAGUUCCAGGAAGAUGCCUUUGGGAAGCAUGUCACCAACCCGGCCUUCACCAAACUCCCUCCAGUCAGAAGUCCAGAAAGAAGAGAUAGAAAAGCAUCAGCUAAUGCUCGAAAGAGGAAACAUUCGCCUUCGCCUCCCCCUCCGACACCAACAGAAUCACGGAAGAAGAGUGGGAAGAAAGGCCAAGCUAGCCUUUAUGGGAAGCGCAGAAGUCAGAAAGAGGAAGAUGAGCAAGAAGAUCUAACCAAGGAUAUGGAAGACCCAACACCUGUACCCAAUAUAGAAGAAGUAGUACUUCCCAAAAAUGUGAACCUAAAGAAAGAUAGUGAAAAUACACCUGUUAAAGGAGGAACUGUAGCGGAUCUAGAUGAGCAGGAUGAAGAAACAGUCACAGCAGGAGGAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-100.70 kcal/mol

Ensemble Metrics

Free Energy: -109.31

Frequency: 0.0000

Diversity: 116.89

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.((((((((((((.((((............((((((((((((((((((((((((((.(((....(((......)))))))))))).)).)))))..)))))................))))))))..((((........).))).....(((((......)))))......))))..)))))))((((.((((..(.((((...............)))).)..))).).))))((((((.......)))))).(((((((.((..............((.((((..........))))..)).(((...(((.....)))...))).....................)).)))))))........................))))).)))(.(((.((...(..(..(((((..(..((((.........))))...)..)))))..)..))).)))...)

Thermodynamic Ensemble Prediction

({(,{,,|||{|,|(,{((((.,...........,(((((((,((((({,(((((((({{(((....(((......)))))))))))).))}))))).)))))))............{{({{.,||,,..,{{,........}.}}}.....(((,{..||,.,}}||{....}}||,..|||||||((((.((((..(.((((...............)))).)..))).).))))((((((.......)))))).(((((((.((.....{{.......{{.((((..........))))..}}.,{{...(((.....)))...}||{{{.....,,,,,........)).)))))))....,}},,.,||.......{,,,(((......}}||||||...}}}}}.,((((.,{,.{(((...,...,.}}))...)..})}))..},,.,))))},..)