Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0024600

Sequence Length

593 nt

GC Content

0.4570

AUGGAGUCUCUCUCUGUCACCCAGGCAGGAGUGCACUGGCGCCAUCUCAGCUCACUCCAACCUCCACCUUCCGGGUUCAAGCGAUUCUCCUACCUCAGUCUGCUGAGCAGAUGGGAUUACAGGCGCCUGCCACCAUGCCCGGCUUAUUUUUGUAUUUUCAGUAGAGACGGGGAUUCGCUAUGUUGGUCAGGCUGGUCUCAAACUCCUGACCUUAGUGAUCCACCUGCCUCGGCCUCCCAAAGUGCUCUGAUUACAGGCAUGAACCACCGCGACCGACCUACUGUUUGUCUUUUAAAGUGAUCUUGAGCAUAUGUUCUACAAAUAAUGAAGGUGUACAACCUCAGAAACUGUUUGCUAUCAGUAGCUAUAAUCAGUCUUGUUUAUAUUUCAUAUACUUGUAUGUUUUAGCCAAGCUAGCCUUUAUGGGAAGCGCAGAAGUCAGAAAGAGGAAGAUGAGCAAGAAGAUCUAACCAAGGAUAUGGAAGACCCAACACCUGUACCCAAUAUAGAAGAAGUAGUACUUCCCAAAAAUGUGAACCUAAAGAAAGAUAGUGAAAAUACACCUGUUAAAGGAGGAACUGUAGCGGAUCUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-147.00 kcal/mol

Ensemble Metrics

Free Energy: -158.33

Frequency: 0.0000

Diversity: 207.34

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.....))))))((((((((..((((((..((((.......))))..))))))..))).........))))...(((((.(((((........(((((((((((((((((......(((....)))......)))).......)))))....))))))))...))))).))))).....(((((((..(((.....)))))))))).....(((((..((((.....(((((....((((((.((((((.((......)).....(((.(((.....))).))).......))))))..))))))..((((.(((.....(((.(((.....))))))...((((...((((....))))......))))(((((((((.((((.....(((...((((((.((...(((..((.....))..))))).)))).))..)))..)))))))))))))...((((......)))).(((.....)))....(((((.....)))))..(((((...))))).......))))))).........(((((((......)).)))))...)))))....)))).)))))..)

Thermodynamic Ensemble Prediction

((((((,,.,.|}||||(..,,,||||||||,{.,,,{{|.||}}{{|||.{|,||,|,.|||,,...,,..||||{{,{((((.(((((....{,.,((((({{{||{|{||||......(({,...))).....,))}),......,,|||,,,|||}}}}}||..|||}}.}||||({{,,(((((((..(((,,....}|||}}}||,|,||||{{,.|}||{|||,,{{{{,....((((((.((((((.{(,.....,,...,.(((.(((.....))).))).......))))))..))))))..{{{{.{{,.....{(,{(((.....)))))}...{(((...{{{{.,,,)}}),..,,.|}}|(((((((((.{{{(.,...{{{,..||{{{{.((...(((..((.....))..))))),})}}.}}..,,),})}}})))))))}),.}|||,.,,.,})),}.,||}}}}}),,...}|||,|.,,,,))))}..(((({...})))).......,,)))))}}...,...{{||{||......)),|||||,.,)))})..}}}}))})),.}.,)