Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0025100

Sequence Length

379 nt

GC Content

0.4301

CUAUGAUACUUGGGUCCAUAGUAAUGAUGUUGAUGCUGAAAUUGAAGAUCCACCAAUUCCAGAAAAACCAUGGAAGUCAGAAGUCCAGAAAGAAGAGAUAGAAAAGCAUCAGCUAAUGCUCGAAAGAGGAAACAUUCGCCUUCGCCUCCCCCUCCGACACCAACAGAAUCACGGAAGAAGAGUGGGAAGAAAGGCCAAGCUAGCCUUUAUGGGAAGCGCAGAAGUCAGAAAGAGGAAGAUGAGCAAGAAGAUCUAACCAAGGAUAUGGAAGACCCAACACCUGUACCCAAUAUAGAAGAAGUAGUACUUCCCAAAAAUGUGAACCUAAAGAAAGAUAGUGAAAAUACACCUGUUAAAGGAGGAACUGUAGCGGAUCUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-67.20 kcal/mol

Ensemble Metrics

Free Energy: -75.39

Frequency: 0.0000

Diversity: 77.38

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.......((((((.((((........(((((((((.........(((.......(((((.........))))).......)))...................)))))))))...(.(((....))).).........((((.((((..(.((((...............)))).)..))).).))))((((((.......)))))).(((((((.((..............((.((((..........))))..)).(((...(((.....)))...))).....................)).)))))))....)))).))))))))..((((.(((......)))((((((.((......)).))))))))))..

Thermodynamic Ensemble Prediction

((((....{((((((.((({........(((((((((....,{,..,.,.......(((((.........))))).......|||,........,.},,.....)))))))))...{.(((....))).|....,|,,.((((.((((..{.((((...............)))).}..))).).))))((((((.......)))))).(((((((.((.....{{.......{{.((((..........))))..}}.,{{...(((.....)))...}||{{{.....,,},}..,.....)).)))))))....}))).))))}},}....}}}|(,......,,|((((({.{(......)).)))))),},..)