Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0025400

Sequence Length

373 nt

GC Content

0.4450

AAGAAUGGUUGAGACCGGUGAUGAGAAAAGAGAAGCAAGUGUUAGUGCAUUGGGGCUUUUACCCAGACAGUCAGAAGUCCAGAAAGAAGAGAUAGAAAAGCAUCAGCUAAUGCUCGAAAGAGGAAACAUUCGCCUUCGCCUCCCCCUCCGACACCAACAGAAUCACGGAAGAAGAGUGGGAAGAAAGGCCAAGCUAGCCUUUAUGGGAAGCGCAGAAGUCAGAAAGAGGAAGAUGAGCAAGAAGAUCUAACCAAGGAUAUGGAAGACCCAACACCUGUACCCAAUAUAGAAGAAGUAGUACUUCCCAAAAAUGUGAACCUAAAGAAAGAUAGUGAAAAUACACCUGUUAAAGGAGGAACUGUAGCGGAUCUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-65.60 kcal/mol

Ensemble Metrics

Free Energy: -71.74

Frequency: 0.0000

Diversity: 82.29

Structure Visualization

Structure Prediction

MFE Structure Prediction

........(((.(((...((((........((((((.(((((....)))))...)))))).........))))...))))))..........((((..(((((......)))))......(((..(((((...((((.((((..(.((((...............)))).)..))).).))))((((((.......)))))).(((((((.((..............((.((((..........))))..)).(((...(((.....)))...))).....................)).)))))))..)))))...)))...........(((......)))((((((.((......)).)))))).)))).

Thermodynamic Ensemble Prediction

.....,,,({,.{{{,,.((((........{{{{((.{((((....))))}.,,||||||.,.......))})...)))),,..........{,,,..{((,,..}},..|,||(....}||,,..,,||||,((((.((((..{.((((...............)))).}..))).).))))((((((.......)))))).(((((((.((.....{{.......{{.((((..........))))..}}.,{{...(((.....)))...}||{{{.....,,,,,........)).)))))))....,}}.,.,||...........(((......)))((((((.((......)).)))))).))),.