Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0029000

Sequence Length

446 nt

GC Content

0.4776

GGCUGGAGUGCAGUAGGGCGAUCAGGGCUCACCGCAGGCUCAACCUCUCAGGCUGAAGUGAUCCUCCCACCCCAGCCUCCUGGAUAGGAUUGCAGAACAAUUGUUUGACCAGACCCAACAUCUACCUCAUUCCAGACAUUGAUCUGAAGUUGGCUAACAAAUUGAAAGAUAUCAUCAAACGACAUCAGGGAACAUUUACGGAUGAGAAGUCAAAAGCUUCCCACCACAUUUACCCAUAUUCUUCCUCACAAGACGAUGAAGAAUGGUUGAGACCGGUGAUGAGAAAAGAGAAGCAAGUGUUAGUGCAUUGGGGCUUUUACCCAGACAGUCAGAAGUCCAGAAAGAAGAGAUAGAAAAGCAUCAGCUAAUGCUCGAAAGAGGAAACAUUCGCCUUCGCCUCCCCCUCCGACACCAACAGAAUCACGGAAGAAGAGUGGGAAGAAAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-104.90 kcal/mol

Ensemble Metrics

Free Energy: -112.26

Frequency: 0.0000

Diversity: 115.07

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..((((.((.(.(((((((...(((((((.(((.(((((((((....((((((..(((.......)))..)))))).((((..(.(((((.....))))).)....))))..(((((.((....(((..........)))...)).)))))..............(((.((.......)).))).(((.........((.((.(((((.....))))).)))).......)))..(((((((.((.......)).)))))))))))))).)).))).)))).....((((((.(((((....)))))...)))))).))).(((........)))...................(((....)))..(.(((....))).).....))))))))))))))..))((....(((......((......))....))).......))

Thermodynamic Ensemble Prediction

((..((((.((.{.(((((((...,{,((((.({{.({(((((((....((((((..(((.......)))..)))))).((((,,{.(((((,,{,.|||||{|{{{.,,}|..,,,,,.,,....{{,...}}}},,,)),}}}),.|||||,,,,,,..,{,...,,,.{{,,,,..,}}.,|}.(((.........((.((.(((((.....))))).)))).......)))..(((((((.((.......)).)))))))))))))).)),))).)))}.........,|,|{|||,..,))}}|{(({{{{{{.}}}.,.|.}}.,,,,))))..................(((....))}..|,(((....))).,.....)))))))}))))))}|{({{....((,.,....{{......},...}))),......))