Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0037100

Sequence Length

374 nt

GC Content

0.3743

AGACUGGAUCUCCCUGUGUUGCCCAGACUGGUCUUGAACUCCUGGGCUUAAGUGAUCCUCCUGUUUCACGCUCCCAGAGUGUUGGGAUUACAGGCAUGAGCCACCAUGCCCAGCCUAAUCUACUUUUAGAAAAAUGUAUUGAUUCCUCAGUUUAUUCAAGAAGAUGUUUAAGGAGGUUGUUUAAUUAGUAUUUGUUUAUAUAUUUGAAUUUAUAAAACUUAGAAUUAAGACAUGAGUAAUUUUGUCAGAAGCUUUAUUUUUCUCAUGUGUAAUUUGUAUCAUUUUUAGGCAAAGUGUUUCAUGGAUUUCAAAGCUGGAGGCGCCUUAUGUCACAUUCUUGGGGCUGCUUACAAGUAUAAAAAUGAACAGGGAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-85.30 kcal/mol

Ensemble Metrics

Free Energy: -92.41

Frequency: 0.0000

Diversity: 130.80

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.......)((((((((...((((((...(((.....))).))))))....((((..(....)..))))(((((.(((((((((((......((((((......))))))...)))).((((....))))........(((((((.....(((((......((((((.((((.((((............)))).)))).))))))......))))).....)))))))((((((((......((((...((((((.....((.((((.....(((((...........)))))......))))))....))))))...)))).))))))))))))))).)))))((((....)))).........))))))).)

Thermodynamic Ensemble Prediction

(.......)((((((((...((((((...(((.....))).))))))....((((,{(,...,..,}||((((,.,||||||,||}}}}}}.((((((......)))))){{{(((,,{{{{,,,{|,||..,{,{.(((((,,,.|}}}|,||}}|.,,,}},||,.|||,,)))|}}...,,,,,,|||,,{{{{|{|||,,},.,,.,}}}}},},.,|||||||,(((((((..,,..{(({...{{{,,{,....,|,||||,.,,,|||{|.....,,,,.}))}}}||,.|,})))},....,}}})}.,|||||{||||,|,,,,,}}),}))))),|||..,.}))}.....,,..))))))).)