Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SMARCC1_0038600

Sequence Length

250 nt

GC Content

0.3600

GUUGCAGUGAGCCGAGAUUGCACCGCUGCACUCCAGCCUGGGUGACAAGACCGAAGCUCCGUCUCAAAGAAAAGAAAAAAAAAAUUAACCGUCUUAACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCUGAGGUGGGAGGAUCACUUGAGCCUGGCAGACAGAGAUUGCAGUGAGCUGAGACUCUGUCUUAAAAAAAAAAAAAGAGUUCACUGUUUUUUUGUUGUU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-47.27 kcal/mol

Ensemble Metrics

Free Energy: -50.11

Frequency: 0.0099

Diversity: 61.43

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((((((.((.......))..))))))).....(((.((((..((((...((..((((.(((((......................................................................................)))))..))))..)).)))).))))))).((((((((..(((((((((((((((...)))))..............)))))))))).))))))))...

Thermodynamic Ensemble Prediction

{.,((((((,((.,....,||..}}})))),..,,(({.{(((..{{{(...{{..||{{.{(({{....................................................................................,,|}|||{,}}}}..)),)))},)))}))){((((((({..{((({{{{{{|{{{|,,,))))}..............}))))))))).)))))))},..