Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPINK5_0000300

Sequence Length

250 nt

GC Content

0.3400

UGUCACUGAGUUGGUGUUUAAAACUCUGUUGAAUAUGAAAAAAAUAUAUCAGAACAUGAGUCACGAGGCCUGAGUUCCUGUCUCAGCUCUUCCAUUUAUGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUCUGCCACGCCCGGCUAAUUUUUAUGUUUUCGGAUUUUUAGUGGAGACGGGGUUUCACCAUGUUAGCCAGGAUGGUCUCGAUCUGGAUUCUCUUUGAACG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-38.50 kcal/mol

Ensemble Metrics

Free Energy: -42.72

Frequency: 0.0011

Diversity: 75.13

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((..(((((....((((((((((.....(((((((((((((......(((((((...((((.(((((.......)))))..)))).))))))).....................................................(((......))).......))))))).....)))))).....)))))))))))))))..))))(((((.((....)).))))).(((.....)))..

Thermodynamic Ensemble Prediction

,,{{,({((,,(((((....{(((((((((,,,{{({,,{{,,||,,,||{{{.(((((((...((((.(((((.......))))).}))),.})))))).....................................................(((......))).,,,...}}}}}}}},|,,,}}},,,}},,))))))))))))))}..}}))||{||,|||,..}},))))).,,,....})).,.