Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPINK5_0001000

Sequence Length

390 nt

GC Content

0.4462

UCAACAAGAAGAAAGAGCAAGAGCAAAGGCUAAAAGAGAAGCUGCAAAGGAAAUCUGCAGUGAAUUUCGGGACCAAGUGAGGAAUGGAACACUUAUAUGCACCAGGGAGCAUAAUCCUGUCCGUGGCCCAGAUGGCAAAAUGCAUGGAAACAAGUGUGCCAUGUGUGCCAGUGUGUUCAAACUUGAAGAAGAAGAGAAGAAAAAUGAUAAAGAAGAAAAAGGGAAAGUCGAGGCUGAAAAAGUUAAGAGAGAAGCAGUUCAGGAGCUGUGCAGUGAAUAUCGUCAUUAUGUGAGGAAUGGACGACUCCCCUGUACCAGAGAGAAUGAUCCUAUUGAGGGUCUAGAUGGGAAAAUCCACGGCAACACCUGCUCCAUGUGUGAAGCCUUCUU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-89.00 kcal/mol

Ensemble Metrics

Free Energy: -95.82

Frequency: 0.0000

Diversity: 61.80

Structure Visualization

Structure Prediction

MFE Structure Prediction

((........))((((((....))..(((((....((((.((((((.........))))))...)))).....((.(((((..........))))).))(((((.((((((......((.((((((((((..(((((...(((((((..((....)).))))))))))))...(.((((....)))).)..............................((((..(((((.((((.....)))).........((((((....))))))..........((.((((...)))).)).....))))).))))..............((((((....))))))....)))).....)))))))).....)))))).)).))).)))))))))

Thermodynamic Ensemble Prediction

((........))((((((....))..(((((....((({.((((((.........))))))...)))).....{{.((({{........,.)))}}.,|(((((.((((((......((.((((((((((..(((({..,(((((((..((....)).))))))))))))...{.(((,..,,|,,,.}..............................,(((..{((((.{(((.....)))}.........((((({....}))))}.}..,.....((.((((...)))).)).....))))),))||,...,,,.......((((((....))))))....)))).....)))))))).....)))))).)).))).)))))))))