Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPINK5_0001100

Sequence Length

585 nt

GC Content

0.4444

UCAACAAGAAGAAAGAGCAAGAGCAAAGGCUAAAAGAGAAGCUGCAAAGGAAAUCUGCAGUGAAUUUCGGGACCAAGUGAGGAAUGGAACACUUAUAUGCACCAGGGAGCAUAAUCCUGUCCGUGGCCCAGAUGGCAAAAUGCAUGGAAACAAGUGUGCCAUGUGUGCCAGUGUGUUCAAACUUGAAGAAGAAGAGAAGAAAAAUGAUAAAGAAGAAAAAGGGAAAGUCGAGGCUGAAAAAGUUAAGAGAGAAGCAGUUCAGGAGCUGUGCAGUGAAUAUCGUCAUUAUGUGAGGAAUGGACGACUCCCCUGUACCAGAGAGAAUGAUCCUAUUGAGGGUCUAGAUGGGAAAAUCCACGGCAACACCUGCUCCAUGUGUGAAGCCUUCUUCCAGCAAGAAGCAAAAGAAAAAGAAAGAGCUGAACCCAGAGCAAAAGUCAAAAGAGAAGCUGAAAAGGAGACAUGCGAUGAAUUUCGGAGACUUUUGCAAAAUGGAAAACUUUUCUGCACAAGAGAAAAUGAUCCUGUGCGUGGCCCAGAUGGCAAGACCCAUGGCAACAAGUGUGCCAUGUGUAAGGCAGUCUU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-137.90 kcal/mol

Ensemble Metrics

Free Energy: -149.91

Frequency: 0.0000

Diversity: 141.94

Structure Visualization

Structure Prediction

MFE Structure Prediction

((........))((((.....(((....)))....((((.((((((.........))))))...))))(((.(((...((((((.((............(((((.((((((......((.((((((((((..(((((...(((((((..((....)).))))))))))))...(.((((....)))).)..............................((((..(((((.((((.....)))).........((((((....))))))..........((.((((...)))).)).....))))).))))..............((((((....))))))....)))).....)))))))).....)))))).)).)))...))))))))((((.......................))))...(((..(((((((((....((((..(...................)..))))...)))))))))....)))..........((((((.((........)).)))))))))))).....((...((.(((((((.......))))))).))...))..))))

Thermodynamic Ensemble Prediction

((........))((((.{...(((....)))....((({.((((((.........))))))...))))(((.(((.{{({(,...,,..,,}}},|.,{({{{,.(({|{|......||,||{(((({((.,(((({...(((((({..{|..,,)),))))}))})))}...{.{((,..,,|}},.,,,.,,,{,,.....................,(((..,((({.{(((.....)))}.........{(((({,...})))}}.|,,,.....((.((((...}))).)).,..,))))),))||,...,,,.......((((((....))))))....|||}.....))))|||}.,,,.}}}}}).,),))}..|}||||||},,{{.,,,,}}..........,...,.|}|}...(((..(((((((((....{,{,..({.....|......,.|,,.,..}})),..)))))))))....)))....}))))))(((((.((........)).))))).)))))).....((...((.(((((({.{....}))))))).))...)).,))))