Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_SPINK5_0001400

Sequence Length

523 nt

GC Content

0.4340

CCAGAAAGAAAAUGAGGAAAGAAAGAGGAAAGAAGAGGAAGAUCAGAGAAAUGCUGCAGGACAUGGUUCCAGUGGUGGUGGAGGAGGAAACACUCAGGACGAAUGUGCUGAGUAUCGGGAACAAAUGAAAAAUGGAAGACUCAGCUGUACUCGGGAGAGUGAUCCUGUACGUGAUGCUGAUGGCAAAUCGUACAACAAUCAGUGUACCAUGUGUAAAGCAAAAUUGGAAAGAGAAGCAGAGAGAAAAAAUGAGUAUUCUCGCUCCAGAUCAAAUGGGACUGGAUCAGAAUCAGGGAAGGAUACAUGUGAUGAGUUUAGAAGCCAAAUGAAAAAUGGAAAACUCAUCUGCACUCGAGAAAGUGACCCUGUCCGGGGUCCAGAUGGCAAGACACAUGGCAAUAAGUGUACUAUGUGUAAGGAAAAACUGGAAAGGGAAGCAGCUGAAAAAAAAAAGAAAGAGGAUGAAGACAGGAGCAAUACAGGAGAAAGGAGCAAUACAGGAGAAAGGAGCAAUGACAAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-104.80 kcal/mol

Ensemble Metrics

Free Energy: -113.25

Frequency: 0.0000

Diversity: 100.32

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.....................................((((.......((((...(.(((((((..((.((((.((............((((((.((....)).)))))).(((........))).....(((..((((..(((....)))..))))..)))((((((...((((...))))...)))))))).)))).)).))))))).)..))))....((((..(((((....................)))))..))))))))........(((((((.....(((((............(((((((((.....(((.........))).)))))))))..((((......)))).))))).....))))))).)))(...((((((((...........)))))))).((......))..........((..(((.........................)))..))................((................))...........)

Thermodynamic Ensemble Prediction

((................................,,......}}.......((((...{.(((((((..((.((((.{(...........,((((((.((....)).)))))).{{{........,,,.....(((..((((..(((....)))..))))..)))((((((...((((...))))...))))))}).)))).)).))))))).}..))))....{{,,..{{{{{,{...............,,.))))),{||||{.{{......,.|||||{|.....({{{{.......,....(((((((({.....(((.........))).}))))))))..((((......}))).||||}{{{,,.,|({||.,.,{...((((((((.......,},.))))))))..,},....))))}.,}}}..((..(((.........................)))..)).............,..}}.............}}..{.........,..