Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_STRN3_0005600

Sequence Length

458 nt

GC Content

0.4432

AUAAAGAUGACCUCUCCCCAACUGCUGAGGUUUGGGAUGUAGACCAGGGACUAAUAAGUAAACUGAAGGAACAGUACAAGAAGGAACGAAAGGGGAAGAAAGGGGUGAAGAGGGCCAACAGGACAAAACUCUACGACAUGAUAGCUGAUCUGGGAGAUGAUGAGCUGCCCCACAUCCCUUCAGGAAUCAUUAAUCAGUCUAGGUCAGCCUCUACUAGAAUGACUGAUCAUGAAGGUGCAAGAGCAGAGGAAGGAGUGGAACUUCAACAUUACAAUCUUCUAGACUAUUGCUGCUAAAGACUUGAGACCUACCAUGUUGCCACUGCUGAACCAAUAACGUUUCCAUCUGGAGGAGGCAAGUCAUUUAUUAUGGGUUCUGAUGAUGUUUUGUUAAGUGUACUGGGCCUUGGAGACCUUGCAGACUUGACGGUAACAAAUGAUGCAGACUAUAGUUAUGAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-103.50 kcal/mol

Ensemble Metrics

Free Energy: -113.51

Frequency: 0.0000

Diversity: 159.68

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((((.(((((((.....((..((((((.....))))))..))(((....)))..((((......))))...(((.((((((.....((.....((.((((.((((..((....))......)))).(((((((.(((((.(((........))).))))).........((((((.((.((((((.(((((..(((....)))..))).)).))).))))).)))))).((((.(((((((((..(((((.........)))).)..)))))).).)).)))).....................))))))).)))).))...)).....)).)))).))))).)))))...)))))))(((((((..((((((.((((((((((((((.(.(.(((.((...)).))).).).))))))))).))))..).)).)))))))))))......

Thermodynamic Ensemble Prediction

,...,((((((.((((((({,,{.{{..{{((((|....,,||))..||{||....}}}..((((......))))....,,.{{,,{,...,{({,.,..,(,((({.((((,,({....||......}}}}.,,.,.,,.{((((.(((,,,,.,,,|}|,}}}}||}}}.,.,,||||||,,..{{{|,,.{{{||||{||},.{|||,,.|||}}.||},}}})},}}}|||{{({,,{|||{,{({,{,{{((,..,..,..}}}}.,..})))))|}.},.,,}),}}}.....,,,),,......)})))))}),)).))..,)).....,}}}})).))))).))))),..)))))))(((((((.,((((((.((((((((((((((.(.{.(((.{{...,).))).}.).))))))))).))))..).)).))))}}}})}),}}}}}