Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_STRN3_0006100

Sequence Length

398 nt

GC Content

0.4347

AUAAAGAUGACCUCUCCCCAACUGCUGAGGUUUGGGAUGUAGACCAGGGACUAAUAAGUAAACUGAAGGAACAGUACAAGAAGGAACGAAAGGGGAAGAAAGGGGUGAAGAAUCCAAGAAAACAUGUUGUCACCAGGAAAUACAGUUGUUUAAAGUGUGACUUGAAGCCAAAUAUCCAAAAUUAGGGGCCAACAGGACAAAACUCUACGACAUGAUAGCUGAUCUGGGAGAUGAUGAGCUGCCCCACAUCCCUUCAGGAAUCAUUAAUCAGUCUAGGUCAGCCUCUACUAGAAUGACUGAUCAUGAAGGUGCAAGAGCAGAGGAAGGAGUGGAACUUCAACAUUACAAUCUUCUAGACUAUUGCUGCUAAAGACUUGAGACCUACCAUGUUGCCACUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-78.70 kcal/mol

Ensemble Metrics

Free Energy: -87.55

Frequency: 0.0000

Diversity: 147.79

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.....(.((((((((((.....((..((((((.....))))))..))(((....)))..((((......))))................))))).....))))).)...))(......((((((..(((..((((...((((((.(((((((((((((.(((((((((....(((.......(((((.....(((......)))..........((((.(((........))).))))))))).....((((((.((.((((((.(((((..(((....)))..))).)).))).))))).))))))(((....)))..))).....)))..))))))..)))))..))).)))))....)))).))....)))).)))....))))))......)

Thermodynamic Ensemble Prediction

((...{{({{((({(((({,,,{.,,..||||{||,...,,,.}},,,,{{{....}}}..((((......))))....,,,,,.......||||,.....,((((.....}}}}.......((((({((,..((((...((({.({.....}},)))}.)}}|..{{{...,,.,......||,.|||...,,{{......,||,}}}}}}}}.{((((.(((........))).))))}}))).,.,,||||||}|.,||||}.}|(((({,,({{{{,,,|...}},)}.,)}}))))},}},|||{{(({,{{{(({{((.,{{{((.........}})).}..)))))),}.}}.,}))})}}.....}}}).,,},,..)}}))),,,,)))