Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_STRN3_0010100

Sequence Length

451 nt

GC Content

0.4058

GUAUCUUCAGGAAGUAGGUUAUACAGAUACAAUAUUAGAUGUACGGUCUCAGCGGGUAAGGUCAUUACUUGGACUAUCUAAUUCAGAACCAAAUGGAUCAGUAGAAACAAAGAAUUUAGAACAGAUCCUGAAUGGAGGUGAAUCUCCUAAGCAAAAGGGACAAGAAAUAAAAAGGUCCUCUGGUGAUGUUCUUGAGACGUUCAAUUUCUUAGAAAAUGCCGAUGACAGUGAUGAAGAUGAGGAAAAUGACAUGAUCGAAGGCAUCCCAGAAGGAAAAGACAAACAUCGGAUGAAUAAACAUAAAAUAGGUAAUGAAGGUUUAGCUGCUGACCUAACUGACGAUCCUGAUACUGAGGAAGCACUGAAAGAAUUUGAUUUUUUAGUGACUGCUGAAGAUGGUGAAGGAGCUGGAGAAGCACGGAGUUCGGGGGAUGGCACAGAAUGGGGUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-92.40 kcal/mol

Ensemble Metrics

Free Energy: -103.62

Frequency: 0.0000

Diversity: 111.24

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((.......(((.....)))))))))..((((...(((.(.((((((((((.((((.((((((((((...(((...(((((...((....(((((.((..................)).)))))((...((((......))))....))....((((.............))))(((((.((((((.((((..((((((.(((((((....((..(.......)..)).....)))))))..))).))).)))).))))))))))).................)).)))))....)))...))))))))))...)))).)))))).(((((((..((.((((..((((..((.((((((((((((......)))))))))).)).))..)).))....))))(((.....))).)).)))).))))))).).)))......))))..

Thermodynamic Ensemble Prediction

.(((((((((,{.((.{({{,{{{{..({,.....}}..)))}.(({,{((((((.((((.((((((((((...{,{.,.(((((...((,...(((((.{{.,,,........}}}...}}.))))),,..}||{{.,,,.}}|||,........}|||,.............,|||(((((.((((((.((((..((((((.(((((({....{{.,,.......),.,}.....)}))))),.))).))).)))).))))))))))}.}}}...........,,,,.}}},,....}}....))))))))))...)))).)))))))))}}})).,}..||||,,..{{.,||,,{((((((((((......)))))))))).}).)),,}}.},,{......{((.....}}),|...||||,},}},}..|.|.,..,...})..,