Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_STRN3_0011700

Sequence Length

499 nt

GC Content

0.4048

UACAUUUUUCUGGUUUUGGUAUUAGGAUAAUGCUGGCUUCAUCACGUGAAUUAGCCCGGAUUGCAUUUCUACAAGGCGAAAGAAAAGGUCAAGAGAACCUGAAGAAGGACUUAGUAAGAAGAAUAAAGAUGUUAGAGUAUGCAUUAAAACAAGAAAGGGCAAAAUAUCACAAAUUAAAAUAUGGCACGGAACUGAACCAAGGUGACUUGAAAAUGCCAACCUUUGAGUCAGGUCCUCUGGUGAUGUUCUUGAGACGUUCAAUUUCUUAGAAAAUGCCGAUGACAGUGAUGAAGAUGAGGAAAAUGACAUGAUCGAAGGCAUCCCAGAAGGAAAAGACAAACAUCGGAUGAAUAAACAUAAAGUAAUGAAGGUUUAGCUGCUGACCUAACUGACGAUCCUGAUACUGAGGAAGCACUGAAAGAAUUUGAUUUUUUAGUGACUGCUGAAGAUGGUGAAGGAGCUGGAGAAGCACGGAGUUCGGGGGAUGGCACAGAAUGGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-103.10 kcal/mol

Ensemble Metrics

Free Energy: -114.38

Frequency: 0.0000

Diversity: 132.98

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.(((((((((.((.(((((((((...)))))))))((((((((((((((((.((((....((((((((((((.(((..........)))..(((..(((.....))).))).................)).))))).))))).............))))..))).))))............((((.(((((...((((((((((((((((..........)))))))))...))).))))...)))))(((((.........))))).....)))).......))))))))))).))))))))))(....((...(.((((((................((.(((.(((((...(((......)))...))))).))).)).((.((((..((.((((..((((..((.((((((((((((......)))))))))).)).))..)).))....))))(((.....))).)).)))).)))))))).)...))....)

Thermodynamic Ensemble Prediction

(.(((((((((.((.,((((((((...}))))))},(((((((((((((,((.((((...{((,.{((((((,{({{........{(((|....}.,}}|......,}.))).}},.}}},......{((((........)))))....}}}....))))..},,.))))...........{((({.{((((...((((,((.(((((((....,.,,...,}}},|)))}}})}),))))...))))|(((({.,,,,..|,||}}}.....}))),......))))))))))).))))))))))(.,..((...(.((((((.,..,...........,.,{{,.{{......|||......,}}.{{||||,.,,..})}||}..,,..,..((((..,,{{.}||,{(((((((((((......)))))))))).)).||..},.|}||..}}}}{{{.....))).},..,}))}})))))).)...)).,..)