Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_STRN3_0012600

Sequence Length

460 nt

GC Content

0.3978

GGCAAAAUAUCACAAAUUAAAAUAUGGCACGGAACUGAACCAAGGUGACUUGAAAAUGCCAACCUUUGAGUCAGAAGAAACCAAAGACACAGAGGCUCCCACAGCACCUCAGAAUAGCCAGUUAACGUGGAAGCAAGGCAGACAGCUUUUAAGACAGUAUCUUCAGGAAGUAGGUUAUACAGAUACAAUAUUAGAUGUACGGUCUCAGCGGGUAAGGUCAUUACUUGGACUAUCUAAUUCAGAACCAAAUGGAUCAGUAGAAACAAAGAAUUUAGAACAGAUCCUGAAUGGAGGUGAAUCUCCUAAGCAAAAGGGACAAGAAAUAAAAAGGUCCUCUGGUGAUGUUCUUGAGACGUUCAAUUUCUUAGAAAAUGCCGAUGACAGUGAUGAAGAUGAGGAAAAUGACAUGAUCGAAGGCAUCCCAGAAGGAAAAGACAAACAUCGGAUGAAUAAACAUAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-79.80 kcal/mol

Ensemble Metrics

Free Energy: -89.73

Frequency: 0.0000

Diversity: 113.52

Structure Visualization

Structure Prediction

MFE Structure Prediction

........................(((((...........((((....))))....))))).((((((.(((.............))).)))))).........((((((......(((.(((........)))..)))((((.((.(((((....((((((.......(((.....)))))))))....))))).))...))))...(((((((.....)))))))..(((.((.(((((........))))).))))).........((((((........)))))).))))))....((((........))))...............((((((((.((((((.((((..((((((.(((((((....((..(.......)..)).....)))))))..))).))).)))).)))))))))).))))...............(((......)))...

Thermodynamic Ensemble Prediction

{,,......,,.............{{{({,,...,{{..,{{((||,.}}}|....}|}}..{(((((.(((.............))).)))))|{,.,{{{,||,|||,......,,},}}}...}))}.|||,,{{{.....)))}|,,.....((((((.....,.{{,..,,.,,,))))))...,{{,(((({...((({...{((((((.....))))))),,|||}||.{((((...{{,...||{|{.{{.,,.........|||,..,}.}}}}),,,.)|},,.}},,},|(({........)))}...............((((((((.((((((.((((..((((((.(((((({....{{.,,.......),.,}.....)}))))),.))).))).)))).))))))))))},)))..,}}}..}}})).,}}|......,.,...