Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_STRN3_0012700

Sequence Length

697 nt

GC Content

0.3730

GCCCGGAUUGCAUUUCUACAAGGCGAAAGAAAAGGUCAAGAGAACCUGAAGAAGGACUUAGUAAGAAGAAUAAAGAUGUUAGAGUAUGCAUUAAAACAAGAAAGGGCAAAAUAUCACAAAUUAAAAUAUGGCACGGAACUGAACCAAGGUGACUUGAAAAUGCCAACCUUUGAGUCAGGUACUGGUUACAUGGGCGUGUUCAAAAAUUCCUUGAGCUAUACACUUGAUGUACUUCAAGAAUAUCCUUAGCAACAUUAUUUAUAAUAGAAAAUGGAAACUAAUUUCAACAUUAGGGGAUUGGUUAAAUAGAAGAAACCAAAGACACAGAGGCUCCCACAGCACCUCAGAAUAGCCAGUUAACGUGGAAGCAAGGCAGACAGCUUUUAAGACAGUGAGUAAUUACUUAUUUUCAACCUUCUUUAAGGAUCUAGGUAUCUUCAGGAAGUAGGUUAUACAGAUACAAUAUUAGAUGUACGGUCUCAGCGGGUAAGGUCAUUACUUGGACUAUCUAAUUCAGAACCAAAUGGAUCAGUAGAAACAAAGAAUUUAGAACAGAUCCUGAAUGGAGGUGAAUCUCCUAAGCAAAAGGGACAAGAAAUAAAAAGAAAAUGCCGAUGACAGUGAUGAAGAUGAGGAAAAUGACAUGAUCGAAGGCAUCCCAGAAGGAAAAGACAAACAUCGGAUGAAUAAACAUAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-124.70 kcal/mol

Ensemble Metrics

Free Energy: -139.15

Frequency: 0.0000

Diversity: 170.93

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((...((((.(((((((..(((..........))).......((((((((...((((((.((((((......(((((........))))).........((((((.....................(((((...........((((....))))....))))).((((....(((.((((((((((..((((.((((((((.......))))((((((..(((((......)))))..))....))))..((((.((((...)))).))))....(((((......)))))((((((((((..........))))))............))))...))))))))...))))))))..)).)))....))))......))))))..((.(((((((....))))))).))...)))))).......)))))).))))))))..(((.....))).........(((((((....((((....(((((((.....))))))))))))))))))...((.((....)).)).)))))))......((((((........))))))((((......))))...))))..))).....................((((((.....((((..(((.((........).).))).....))))((....))..........))))))(((......)))...

Thermodynamic Ensemble Prediction

((((...{((,.{((((((,{({{........{{|||....}.,|||......,}.))}.}},.}}},......{((((........)))))....}}}....)))).....,,,,,...........{((({{(,..{{,,.,(((({{..|,},....,)}),,||||||,||||,.|,||||||,(((.(((((,(((.....,{,{{{||{|{,,,..(((((......)))))..,.{{{{{.{{..((((.(((,...}})}.})))({{,,...})))....{(((((((((((((..........))))}...........(((.{{{{,|,.,}},......,,,,},....}))).}}}{((((.....)))))...{{.(((((((....))))))).}|.((((((.{,.(((((((.,((((((.......,,,.....},}))))))...{((((((....{(((,...{((((((.....)))))))))))))))))}...{{.((....)).)}.,,.,.................,))))))).}}.)))))).}))))))))}))..,))))}.............}},.))))).))).,,}}}}},..,{{.,,.....,.,).}.,))},}}}(((((..,,.{...........}.}})))))............