Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_STRN3_0013200

Sequence Length

262 nt

GC Content

0.4046

AAGAAACCAAAGACACAGAGGCUCCCACAGCACCUCAGAAUAGCCAGUUAACGUGGAAGCAAGGCAGACAGCUUUUAAGACAGUAUCUUCAGGAAGUAGGUUAUACAGAUACAAUAUUAGAUGUACGGUCUCAGCGGGUAAGGUCAUUACUUGGACUAUCUAAUUCAGAACCAAAUGGAUCAGUAGAAACAAAGAAUUUAGAACAGAUCCUGAAUGGAGGUGAAUCUCCUAAGCAAAAGGGACAAGAAAUAAAAAGUCCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-40.30 kcal/mol

Ensemble Metrics

Free Energy: -46.10

Frequency: 0.0001

Diversity: 66.52

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((............(((.((((........................)))).)))...((((((.((.(((((....((((((.......(((.....)))))))))....))))).))...))))..))......))).....((((((((.....(((((...(((...(((((.((..................)).)))))....)))...))))).((((........))))............))))))))

Thermodynamic Ensemble Prediction

.{...(((.....{.,.((((((.{{{{,,,..,,.......,,,.|,,...}))).}}}.,{{{.,,,.||}||{{{,,..{(((((....,,.{{,.,},.},,}}}}}}....,}}}}}}),.,)))),.}.}..,..)))..}}.((((((((.....{((((...(({...(((((.((.,,,........,}}...}).)))))....)))...)))}),{(((........)))}............))))))))