Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_STRN3_0015100

Sequence Length

496 nt

GC Content

0.3790

UUUCAUUACUGAAAAAAAUAGUUGAUAUCUUCUGUUUAAGAGUGGCACUACAUUACACUAAAGCCCGGAUUGCAUUUCUACAAGGCGAAAGAAAAGGUCAAGAGAACCUGAAGAAGGACUUAGUAAGAAGAAUAAAGAUGUUAGAGUAUGCAUUAAAACAAGAAAGGGCAAAAUAUCACAAAUUAAAAUAUGGCACGGAACUGAACCAAGGUGACUUGAAAAUGCCAACCUUUGAGUCAGAAGAAACCAAAGACACAGAGGCUCCCACAGCACCUCAGAAUAGCCAGUUAACGUGGAAGCAAGGCAGACAGCUUUUAAGACAGUAUCUUCAGGAAGUAGGUUAUACAGAUACAAUAUUAGAUGUACGGUCUCAGCGGGUAAGGUCAUUACUUGGACUAUCUAAUUCAGAACCAAAUGGAUCAGUAGAAACAAAGAAUUUAGAACAGAUCCUGAAUGGAGGUGAAUCUCCUAAGCAAAAGGGACAAGAAAUAAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-80.40 kcal/mol

Ensemble Metrics

Free Energy: -90.94

Frequency: 0.0000

Diversity: 155.19

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((...........((((((..(....)..))))))...((((...........))))....(((...((((.(((((((..(((..........))).......((((((((...(((.....(((((......(((((........)))))..........(((((.....................(((((...........((((....))))....))))).((((((.(((.............))).))))))........)).))).......(((.(((........)))..)))......))))).....))).))))))))..(((.....))).........(((((((....((((....(((((((.....))))))))))))))))))...((.((....)).)).)))))))......((((((........))))))((((......))))...))))..)))....))))(.....)

Thermodynamic Ensemble Prediction

((((..,,{{{|.....,,,{{{{...{(((|(({{{{,{{(((,{{...{,...||||...((((...{((,.{((((((,{({(........{{|||....}.,|||.......}.})}.}}..}}}.......{((((........)))))....}}}....)))).....................{{{,,,{...,||..}||{||||.||}}....}}}},.|{||||,|{|,,,,,,.......}}}.}}}}}|{{.{{{{,||.,}},......,,,,}},...}))}.}}},,{{{.....))))},,.....((((((....,,.{{,..,,.},,})))))...,{{((((,...{(((,...{((((((.....)))))))))))))))}}||||...{{....||{||,||,}||,,.....,{||,,..,.,,}})}}}})||{{,,,..,)))||..,,,...))},...,,,,,.....)