Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_STRN3_0020900

Sequence Length

417 nt

GC Content

0.4580

UGCUUGAAGUUACUGAGUUCUGAAGUUGUUGAGCUUCUCUCUGCUUUGCUAUUGAUUUGAGCAAGUUCGGAGCACCAUGGCCCUCAUCUUCGCAUUUUACGCUUUUUUUGCAAGUUUAUCAACAAGCUCAAUUAAACCACCAACUGUUUUCUGAAACUGGCCAGUUUUGUCCGCAAAGUUCUUGCACUCUUCUUUGAGCUCUGUGGUCUGCUGGGUAACCUCUGAGUCCAACACCCACAGCUUGUUCAACUCAUCAAAGUGCAGUCCCUCUUCAGCCAGGAUGUCCUUUACCAUAGUUGUUUCGCAUCCAAGUUCCCUAGAGAAGCUCUGCUCUGAAGGAGUGACGGUGACAGUCAGGAGGAGGUGUGUCAUAGGAACAAGGGUCGAGAAAGAAUAAAGUUCGCUUGCUUGUCACAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-93.00 kcal/mol

Ensemble Metrics

Free Energy: -102.26

Frequency: 0.0000

Diversity: 156.23

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((((.((((((((.((((..((..((.((((((((((((((...(((.((((((((((((((((.((.((......))))........(((..............))).(((((......)))))................(((((((.((...((.(((((...(.(((((.(((((..............))))).))))).).))))).))...)).)))...)))).....)))))))))))...)))))))))))).........(((..((((((.....((....))......))))))..)))....)))))))))).)).))..)))).)..)))))))..)))))......((((.((.((((((.....((......)).....)))).))....)).)))).

Thermodynamic Ensemble Prediction

,{({,{(,(({{(((,{(((({{(({,{{.{((||||{{{{{({||,||,.,{{{.{{{|||||{|,}|||||..,.((((({{....,,,{{,....,.{{,,,..,||}.{((({......}}}}},,...,,,,........||||...}},,,||,(((((...{.(((((.(((((..............))))).))))).}.))))).},.,,,|{||,,,.,.||,|,.,}}|||}|||}|,||,,,,.||}||||...,{{{..{((..((((((.....({....},.,....))))))..))}....))))},)}}),)).}),,},))})..}))))}}..)))))}}},}}||||.,,.,||}|{.|}}}}|}.,...}}.,..,}}}},}}}})})),}})),