Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_TTBK2_0014900

Sequence Length

406 nt

GC Content

0.4680

GUUAAAUGGAAACCACCCUUGGGAACUGGAUGCCUGUGUAGCUGUUCUACCAUAUCAGUGUAUUGCAAUGAGUGGGGGAGGAGAGCAGCUGGAUAUCCUGAGUGUUGGAAUCCUAGUGAAAGAAAGAUGGAAAGUGUUGAGAAAGAUUGGGGGUGGGGGCUUUGGAGAAAUUUACGAUGCCUUGGACAUGCUCACCAGGGAAAAUGUUGCACUGAAGGUGGAAUCAGCUCAACAACCAAAACAAGUUCUGAAAAUGGAAGUUGCUGUUUUGAAAAAGCUGCAAGACAGGUUCUCAUUCUGUUGCUUAGGCUGGAGUACAGUGGCACAAUCAUGGCUAACUGCAGUCUUGAACUCCUGGGCUCAGGCAAUCCUUCUGUCUCAGCCUCUUCAGAAGCUGGGACUUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-113.70 kcal/mol

Ensemble Metrics

Free Energy: -120.56

Frequency: 0.0000

Diversity: 166.48

Structure Visualization

Structure Prediction

MFE Structure Prediction

((....(((...(((....)))...)))...))(((...(((((((((.((...(((.(((...))).))).....))...)))))))))((((..(((((((.(.(((.(((...............))).(((.((....)).))).((((((((((((((((..............((((((.........))))))....(((((..((((........))))..))))).))))).(((.((((......)))).)))((((((((.........)))))))))))))))))))(((....((((((.(((....((((.((....))))))))).))))))..)))))).).)))))))..))))....((((((((.((....)).))))))))..)))

Thermodynamic Ensemble Prediction

((,...,{{.,,|({...,|||{{.|||..,|}{(({.,(((((((((,((...(((,(((,..,|,.||}|||||.|.,,||}|||}}|((({.{((|{(((.{{{({.((({(((......,,.{{{{,..||,||,,,....}}}||||{{,||{||||,|||....,,,..,.,}||||,,.,.,.}}}})))}}}....{{{||,,||||.,,,,,,,}))),,)))))..||,,.(((.((((......)))).)}}({((((({.....,,.,}}}||||||,,,,,,.}}}||||||{((((((,(((.,,{((((.({....))))))))),})}))).,..,})),)}))})))),.}))).,},{|||||||.{{.,,.)).)))))))),,)))