Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_TTC3_0005500

Sequence Length

282 nt

GC Content

0.3723

GGUGUGCAAUAUAAAGAUUAUAUCCAAAGUGAGAGGAAUUUGGAAUUUGACAUCUGCAGUAUAUGGUGUAGUAAACCAAUUUCUGUCCUGCAAGAUUAUUGCGAUGCCAUUAAAAUAAACAUCUUCUGGCCACUUCUGUUUCAACAUCAAAACAGUUCCGUAAUAUCACGAUUGCAUCCCUGUGUGGACGCCAACAAUUCACGUGCUUCUGAGAUAAAUUUGAAGAAACUACAACAUCUUGAGUUGAUGGAAGAUAUUGUGGAUUUGGCAAAGAAAGUUGCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-53.10 kcal/mol

Ensemble Metrics

Free Energy: -58.48

Frequency: 0.0002

Diversity: 101.31

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((.((.((((..(((..........((.((((((.((((.....((.((((.((((((.....(((((...((........)).)))))....)))))))))).))......))))..)))))).)).....((((((........))))))....(((((......))))))))..)))))).)))))(.(((((..(.(((((((..((.....))..)))..((((((.(((((..........))))).))))))....))))..)..))))).)

Thermodynamic Ensemble Prediction

(((((.({(((({..{{{....,....{(,((,(((({{{{({....{,,((((.{{{,,,...}}|}|,,...,)))},}}}),)}))|||{...,}))))|}}|{||........,...},}||),}},,...((((((........))))))...{(({{{,....,}}}}}}}}..}))))).)))))(.(((((,,,.(((((({..{{....,}|,,))|,.(({(({.{{{{|,,,,,..,.,))))),)))))),..,}))}..,..})))).)