Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_TTC3_0008500

Sequence Length

671 nt

GC Content

0.3830

GAAGGAGAACUAAUGAAAAUGAAAGGAAAUGAAGAGUUUUCCAAAGAAAGAUUUGAUAUAGCUAUUAUCUAUUACACCAGAGCCAUUGAAUAUAGACCUGAAAACUACCUUCUUUAUGGUAACCGAGCUCUUUGUUUUCUUCGUACUGGACAGUUUAGAAAUGCACUCGGUGAUGGAAAGAGAGCCACUAUUCUGAAGAACACUUGGCCAAAGGGUCAUUAUCGUUAUUGUGAUGCUCUUUCUAUGCUGGGGGAAUAUGACUGGGCCCUGCAAGCAAACAUAAAAGCUCAAAAACUCUGUAAAAAUGACCCUGAGGGAAUCAAGGAUCUAAUUCAGCAGCAUGUAAAGUUACAAAAACAAAUAGAAGACCUACAAGGUCGAACAGCAAAUAAGGAUCCAAUUAAAGCCUUUUAUGAAAACAGGGCCUACACACCUAGGAGUUUAUCAGCACCUAUAUUUACUACUUCACUUAACUUUGUGGAGAAGGAAAGAGAUUUCAGAAAAAUUAAUCACGAAAUGGCCAACGGUGGUAAUCAGAAUCUAAAGGUGGCGGAUGAGGCGUUGAAGGUAGAUGAUUGUGACUGUCAUCCUGAAUUUUCACCACCAUCAAGUCAGCCUCCAAAACAUAAAGGAAAACAAAAAUCUCGAAACAAUGAAUCAGAAAAGUUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-142.30 kcal/mol

Ensemble Metrics

Free Energy: -155.03

Frequency: 0.0000

Diversity: 204.16

Structure Visualization

Structure Prediction

MFE Structure Prediction

....((((................(((((........))))).......((((((((...((.(((.((((..((.((((.((....(((((.(((.((......((((........))))....)).))).))))).....)).))))...)).)))))))))....((((.((((((....(((((((((((((....((((((((((....((.((((...((.(((.(((.((((((((.(((((((((....((..(((((((((........((((((((((.................((((((...)))..))).((((((......((....((((....)))).............(((((...))))).....))......))))))......)).))))))))....)))))))))..))))).........)))))).............((((((........))))))..))))))))))).))).))...)))).))....))))))..))))....))))))).....))))))((((((.(.(((..((........))..)))).))))))....)))))).))))))))))))....(((..........))).........)))).......(((((.......))))).

Thermodynamic Ensemble Prediction

{..{(((((((..,.....,.....,,.,,....}}}))))).......,,,,{((({..,,.,|||||{{{,.,..{,,.{{{{{||,,,,|{|.,(({{,.,,({{(,..,,,..}}},..((((.,.{{(((((((({.{{{{(({,.,{{..,,,..,|},||}|||,,{{{|,,||{.(((((((((((((..,.((((((((((....((.((((..,{{.{(||((,.((((((({.{{(((({{,....{{..(((((((((........((((((((((.................,{{(((...)))..}},.((((((......((....((({....)))}.............(((((...))))).....))......))))))......))}})))))))....)))))))))..},}})}}..||,,.})))),.,,,......{{.((((((........)))))).})))))))),}}})),,}..,.)))).))....))))))..)))).,..))))))).....)))))),{{{({|(.{{({,,{{{,||||||..,,,,}})))))|,,,,|}}))},},,),})..}}}.}},|}|.........,)))}}}},,,...})}}......}},.,.,,...})))))}