Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_TTC3_0017000

Sequence Length

345 nt

GC Content

0.4087

GUGGCGGAUGAGGCGUUGAAGGUAGAUGAUUGUGACUGUCAUCCUGAAUUUUCACCACCAUCAAGUCAGCCUCCAAAACAUAAAGGAAAACAAAAAUCUCGAAACAAUGAAUCAGAAAAGUUCAGUUCUAGUUCACCAUUGACUUUACCAGCAGAUUUGAAGAACAUCUUGGAGAAACAGUUUUCUAAAUCUUCCAGAGCUGCACACCAGGAUUUUGCUAAUAUAAUGAAAAUGCUGAGAAGCUUAAUUCAAGAUGGCUAUAUGGCCUUAUUGGAGCAGCGUUGCCGCAGCGCUGCACAGGCCUUUACAGAGUUGCUGAACGGUUUAGAUCCUCAAAAAAUAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-75.10 kcal/mol

Ensemble Metrics

Free Energy: -81.75

Frequency: 0.0000

Diversity: 87.35

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((.(((((((.(.(((((((.((((((.......))))))....))))))).).)).)))..)).)))(((..........)))...........((((.....(((((.((((........)))).)))))...))))........((((.((((((((.....((((((((....)))))))).)))).)))).))))....(((.(((((............))))).)))..........(((((...((((....))))...)))))(((((((((...)))))))))....))(((((..(((...(((((...)))))...)))......)))))

Thermodynamic Ensemble Prediction

({(((.(((({((.(.(((((((,((((((.......)))))).,..))))))),).)),)),.})).))|{|{.........{{{{...........,,,,.....(((((.((((........)))).))))}...}}}}.,......((((.((((((((...,.((((((({....}))))))).)))),,))).))))....(((.(((((............))))).)))...}}},...{{{{{...((({....})))...}}}},(((((((((...))))))))).,|||||,{{.||{|,..,})}|}.,}))),}.}}))..........,)