Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_VIM_0003100

Sequence Length

267 nt

GC Content

0.5468

GAGGAGAUGCGGGAGCUGCGCCGGCAGGUGGACCAGCUAACCAACGACAAAGCCCGCGUCGAGGUGGAGCGCGACAACCUGGCCGAGGACAUCAUGCGCCUCCGGGAGAAAUUGCAGGAGGAGAUGCUUCAGAGAGAGGAAGCCGAAAACACCCUGCAAUCUUUCAGACAGGAUGUUGACAAUGCGUCUCUGGCACGUCUUGACCUUGAACGCAAAGUGGAAUCUUUGCAAGAAGAGAUUGCCUUUUUGAAGAAACUCCACGAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-82.90 kcal/mol

Ensemble Metrics

Free Energy: -86.46

Frequency: 0.0031

Diversity: 71.41

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((((((.(((((((((....))))...)))))..)).........((((((......)))).)).(((((.((((.((((((.(.......)))).)))((((.((((((((..(....(((((........)))))......)..)))))))).))))...)))).))))).....))))))).((((.(((((...(((....((((((......)))))))))..)))))))))............)))(.......)

Thermodynamic Ensemble Prediction

((({{((((((({(((((((((....))))...)))))..,,.........,|||||}||{{{||||{||((((((.((((.((((((.{.......})))}}))((((.((((((((..(....(((((........)))))......)..)))))))).))))...)))).))))).....||}}},}.{|||,|{|||.,}|||,...{(((((.,.,,,||||}},,}.})))))),)),}}|},......)))(.......)