Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_VIM_0006300

Sequence Length

221 nt

GC Content

0.4977

AAUGAGUCCCUGGAACGCCAGAUGCGUGAAAUGGAAGAGAACUUUGCCGUUGAAGCUGCUAACUACCAAGACACUAUUGGCCGCCUGCAGGAUGAGAUUCAGAAUAUGAAGGAGGAAAUGGCUCGUCACCUUCGUGAAUACCAAGACCUGCUCAAUGUUAAGAUGGCCCUUGACAUUGAGAUUGCCACCUACAGGAAGCUGCUGGAAGGCGAGGAGAGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-55.20 kcal/mol

Ensemble Metrics

Free Energy: -59.46

Frequency: 0.0010

Diversity: 36.27

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((..((((....))))..))....(((((.(((....))).)))))....(((((..((.((((.......))))......(((((.((..((((((((..(((..(((.......))).)))..))).)))))..))...)))))(((((((((((......)))))))))))..(((((.((..(((....)))..))..)))))))..)))))

Thermodynamic Ensemble Prediction

.....,(,.((((....))))..||,|..(((((.{(,....))}.)))))...,|{(((..{,.((((.......)))).,,,,,(((((.((..((((((((..(((,.(((.......))).)))..))).)))))..))...)))))(((((((((((......)))))))))))..,{(((.{(,,(((....))).,))..)))))))..})))}