Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZBTB44_0002200

Sequence Length

401 nt

GC Content

0.4613

GCUCAGUAGAUGAAGGCGUUUCUGAGGGCUUGCCUACACUUCAAAGCACGUCUAGCACUAAUGCUCCUCCGGAUGAUGAUGAUCGAUUGGAAAAUGUUCAGUAUCCCUACCAACUCUACAUUGCUCCUUCCACCAGCAGUACAGAGCGACCAAGUCCAAAUGGUCCCGACAGACCUUUUCAGUGUCCAACCUGCGGGGUGCGAUUCACCCGUAUUCAGAACCUAAAGCAGCACAUGCUCAUCCACUCAGUACCACUCCAAAGGCAAGGAACCAUGAUUGACAACAGUCAAGCUGUGGAUGAAAUGACCAGGAACGGAGAAUGAAUUCCAAGAGGUGGUUUUUGAAAGAGCAAGAGGAAAGAAAAAAGAAAAGAAGGAAAGAAGAAUAAAGAAGAGAAACGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-88.30 kcal/mol

Ensemble Metrics

Free Energy: -94.40

Frequency: 0.0001

Diversity: 85.08

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((.....)))..((((((((.(((.....)))...((((........(((..(.((..(((((...((((....(((.(((..(((((....(((((...(((...((..((((..((((((.........))))))..)))).(((((........)))))..((((...........)))).....((((((..........)))))).............(((.....)))((((((((..(((.....(((........)))....((((((....)))))).)))))))))))........))...)))...))))))))))..))).)))))))...)))))..)))..)))..........))))..................))))))))

Thermodynamic Ensemble Prediction

..(((.....)))..((((((((.{{(.,.,.}}}.,.{(({....,...(((..(.((..(((((.{,((({.,,.(((.(((..(((((....{((((...(((...((..((((..((((((.........))))))..)))).(((((........)))))..{{{{,,,,.....,,})))....,((({(({{{.....}}))))}}............,(((.....)))|(((((((.,(((.....(((........)))....{({(((,,..}})))).))})))))))}........))...)))...))))))))))..))).)))})))...)))))..)))..)))..........)}))..................))))))))