Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZBTB44_0003400

Sequence Length

411 nt

GC Content

0.4891

UACAGAGCGACCAAGUCCAAAUGGUCCCGACAGACCUUUUCAGUGUCCAACCUGCGGGGUGCGAUUCACCCGUAUUCAGAACCUAAAGCAGCACAUGCUCAUCCACUCAGGAAUUAAACCAUUUCAGUGUGACCGCUGUGGGAAAAAGUUCACCAGGGCUUACUCGCUAAAGAUGCAUCGCCUAAAGCAUGAAGGUAAACGCUGUUUCCGGUGCCAGAUAUGUAGUGCCACUUUCACUUCCUUCGGGGAAUAUAAACACCACAUGAGGGUUUCCCGGCACAUUAUCCGCAAGCCUCGGAUUUACGAGUGCAAAACAUGUGGCGCCAUGUUCACCAACUCUGGAAAUUUAAUCGUGCACCUGAGGAGUCUGAACCAUGAAGCAUCAGAGCUAGCAAACUACUUCCAGAGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-100.10 kcal/mol

Ensemble Metrics

Free Energy: -107.88

Frequency: 0.0000

Diversity: 124.16

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....(((((..(((((((((((((((((.(((..................)))))))(((((.......)))))...........((((.....))))..(((.....))).....)))))))(((((....)))))((((((....))).)))))))))..)))))....((((..........))))...((.((((...))))))((((...((((((..(((((((............((((((((.......((......))))))))))((.........))..((((((......)))).)).......)))))))))))))))))..((((((((.......(..((..((((.(..((........))..).)))).))..)........))))))))...

Thermodynamic Ensemble Prediction

.....(((((,,({{{{{.,,|||||..,.,,||||....,{{|||,....,((({(({{(.....}})))))}............((((.....))))..{((.....|||.......,}}}}|{{{|.,..}|||}((((({....})).)))})))}}..}))))....|{{(,,.{,.....)}}},..||,,.||}}})}},.,(((({,.{(((((,.(((((((........,,..{{((({{,.....,.{{......))))))))))||,,.......|...{{((((......)))).))...,,,,))))))))}})))},},..((((((((.........{((.,((((.{..((........))..}.)))).),..)},......))))))))..,