Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZNF609_0003800

Sequence Length

448 nt

GC Content

0.5558

CAAACCCACUCCAGGGACUUCCCUGUUCACUCCAAGUGAGGGGGCAGCUAGCAAGAAAGAGGUGCAGGGGCGCUCAGGAGAUGGUGCCAAUGCUGGAGGCCUGGUUGCUGCUAUUGCUCCCAAGGGCUCAGAGAAGGCGGCUAAGGCAUCCCGCAGUGUAGCCGGUUCCAAAAAGGAGAAGGAGAACAGCUCAUCUAAGAGCAAGAAGGAGAGAAGCGAAGGAGUGGGGACUUGUUCAGAAAAGGAUCCUGGGGUCCUCCAGCCAGUUCCCUUGGGAGGACGGGGUGGUCAGUAUGAUGGAAGUGCAGGGGUGGAUACAGGAGCUGUGGAGCCACUUGGGAGUAUAGCUAUUGAGCCUGGGGCAGCGCUCAAUCCUUUGGGAACUAAACCGGAGCCAGAGGAAGGGGAGAAUGAGUGUCGCCUGCUAAAGAAAGUCAAGUCUGAAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-154.50 kcal/mol

Ensemble Metrics

Free Energy: -161.57

Frequency: 0.0000

Diversity: 132.55

Structure Visualization

Structure Prediction

MFE Structure Prediction

(....(((((((..(.(((((((((.(((((((......((.((((((((((...........(((..(((((.((.....)))))))..))).....).))))))))).))..(.((((((((((.........(((((((.(((.(((((...((....((..((((.....))))..))...)).((((......))))....((((......((((.((((....)))).))).).......))))))))))))..)))).))))))))))))).).))))))).)))......)))))).).)))))))...(((((((((((...((....))...)))))))......))))((((.(((((((.((((((((...(......)...)))))))).........))))))).)))))((..(((........)))....))

Thermodynamic Ensemble Prediction

{...(((((((({{((.,,,|||||,(({(({,.,}}},{{{(((((,(((({..,,..(((((((..(((((,({.....}))))))..))).....))))..)),})|}||}}||||||,,{{((((...,..{,(((((,..{(,,,,,|}..|.})))),.{(((.....)))}..,},,..,.((((......)))).....|}},.,.,.},,,,||||}}}.,||}.|||{{,....{{(({{{.,|||||((,,{({,((((,{{,,,.,|||.,,.,,)})....,,}.)))).))).,))),))}}.}))}{{||{{{...||.,,,)),.,))))))}.(((((((((...))).)))))){(((((((...(......)...)))))))}(((.((.{.....).)).)))}{{..,,,..,},...)))}},.))