Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZNF609_0008600

Sequence Length

631 nt

GC Content

0.4105

GCGUGAGCCACCAUGCCUAGCUAUCUUAUUUUCUAUAACUUAUUUUAAUAUAUUAGCCCACCAAUCAGUAACAAUUAACAAAUAUUUAUUUAGCAUCAAGUAUUAGAUCAGCUUUUUCCAUAUCUCCUUCCUACUCUCUGACACAUGCCUCAGUUCUUCACUUGUGGUUUGGUCUCACUCUUCUUCAUGUGUGUCAUGCUUAUCCCAAAUCCAUUUAGGAUUAUAAAAUUCUCCCUAUUCUUUCUCUGACCUAACAGUCCAUGGCUUUACCACAGUUUGUAGUGCAGCAUAUGGUUUUGGGUUUUUAAGUAAUGGGUUUUCUCCUUUUUUCUUUCUUUCUCCUUCCUUCUUUUCUUCCUCCCUUCCUCCCUUCCUUCCUCUUUUCUUUUCUUUUUUCCUCCGUCCCUCCUCCCUCUCUCCCUCUUUCUCCUCCCCUCCCCUCUCUCCCUUCCUCCCUUCCUCUUUCUUUAGAUCCAGCAUCCCAACUAAUGGUUUUGAAUAUAUCCAUUCUCCGACACCACCCUGCCCCCCACCUCCAAGAUUAGAACACAACUUUCCAUUCAGUAGCCAUAUCUCUAUUCUGUUUUGAAUCUUCAGUAGCACUUGGCACAAUGACGGAGUAUGGUAAGUA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-77.00 kcal/mol

Ensemble Metrics

Free Energy: -87.90

Frequency: 0.0000

Diversity: 114.54

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((......)))))...((((...((((................))))...)))).......................(((((((..........)))))))......((((...(((((.((((............(((.((.(((.(((........))).))).)))))..........((((.(((((((((((.......(((((.....)))))...........(((((((((.....(((((((....((((((((.(((.(((...))).))).))).)))))..)))))))...))).))))))..................................................................((((..((((....................................................................(((......))).................((((.(((...............))).)))).................))))..))))....(((....((((((.(((.(((....)))...)))))))))....)))))))..))))))))))).))))))))).)))).

Thermodynamic Ensemble Prediction

(((((,...,.}|||}...((((...((((....{.....,,,...))))...))))..........{{...........,{{{,,,,...,{,,{,.,,,,...)}}..}}|....{{{{{.{{{{............(((.((.(((.(((,.....,,))).))).)))))..........{{{{,{|{{{|||{{(.......(((((.....)))))...........(((((((((.....(((((((.,,.((((((((.(((.(({...})).))).))).))))),,)))))))...))).)))))).....................................................................................,..........................................................{{{......})}...,.............|||,,||{{{,......}},,...},.},,,...,{,,..........||||,,||||,,..,.........,{({{(........,}}},.}))})))))),,,.,}.})}}..}))))}}}))),))))})))).}}},}