Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_ZNF609_0010300

Sequence Length

438 nt

GC Content

0.5616

GAAAGGAGUCGGAGUAAGGACUCUGUCCCCAAGGAAGAUGGGAAGGAAAGCACAAGUAGUGACUGCAAGCUGCCCACGUCAGAGGAGUCUCGCCUUGGGAGCAAGGAGCCCCGGCCAAGUGUCCAUGUGCCUGUGUCCUCCCCACUUACCCAGCACCAGUCCUACAUCCCCUACAUGCACGGCUAUUCCUACAGUCAGUCCUACGACCCCAACCACCCCAGCUACCGGAGCAUGCCUGCUGUGAUGAUGCAGAACUACCCAGGUUCCUACCUGCCUUCCAGCUACUCUUUUUCCCCAUAUGGCAGCAAGGUCUCAGGUGGUGAAGAUGCUGACAAGGCACGAGCCAGCCCCAGUGUGACUUGUAAAUCCAGCUCAGAGUCCAAAGCCCUGGACAUCUUGCAGCAGCAUGCCAGUCACUACAAGAGCAAGUCUCCCACG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-124.80 kcal/mol

Ensemble Metrics

Free Energy: -132.38

Frequency: 0.0000

Diversity: 112.15

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..((((((........)))))).))(........(.(((((.((...((.(..((((((((((((.(((((.........(.(((((.(((..((((.((..((....))(((...(((.((.(((....(((((.((.(((((((((..((...(((.((.((((...((((.(((.(((..((((...(((..(((....))).............)))...))))...))))))))))..)))).)).)))...(((((....))))).......((((...............)))).))..)))...)))))).)).)))))..))).)))))..))).))))))))).))))).).......((..((((((((......))))).))).)).))))).)).))))))))))..).))...)))))))))

Thermodynamic Ensemble Prediction

{{..(({({(,,,,....}))))),}){}.......{.(((({,((...((.{..((((((((((((.(((((.,.......{,{((((.(((..((((.((.{((({,,|,(({,,.{{{....{(({,|,({({,.,,..,,,...,...||},.{{{.{{.((({...{{({.(({.(((..{{{{...,((,.({,....}}}.............|||...}}}|...)))}))})}}..)))).}}.}}}...,{{{{,,,.}}}||{{,,.,,{{...,,,,,..|.,|.,.,|||,}}..}))},..))})),)},)},))))}}},))}}...)}}.))))))))).))))}.}.......((..((((((((......))))).))).)).))))).))},)))))))))..}.))...)))))))}}