Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr11_0645800

Sequence Length

321 nt

GC Content

0.4299

CAACUUUGGUUAUGUUAGUGUUGUUCUCUGAGAUUGAGGUGGAAUAGAAGCUUUGUGUAAAGUGGAGGCCGCUGUCCAUGGCUUCUUUAACCAUGAUGGUGACCAUGGAGGUACUGUAGAACUUUCCAUCAGACACCUUAACUAUCAGCAUGUAGUGAUCCUUGGAGAGGUUGUUGUUUUUUAUGGUAAGUACUCCACUGUUUGAGUCAAUUAAAAAAUGAUCCAAACUGCCUUCCAUUAGGCUGUAUGUCAGUUCAGGGGGUACCUCAGAGUCAGGAUCUGUGGCACUAACUUUCAGAACCUCCACUCCAACAUAGGUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-79.60 kcal/mol

Ensemble Metrics

Free Energy: -87.22

Frequency: 0.0000

Diversity: 111.61

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.((((.....)))).))))((.((((.(.(((.((((((..(((((((.((.(...(((((...)))))..))).)))))))...((((...))))(((....((((((((.(.(((((........((((.....(((((......)))))......(((((.(.(((((((.....))))))).).)))))..(((((.((((.........)))).))))).((((......))))....)))))))))..).))))))))...))).((.((((.((......))..)))).)))))))).)))).)))).))

Thermodynamic Ensemble Prediction

((((.{((,.....}}}}.))))((.((((.(.(((.((((({..{({{({{.{{{(.,.(((((..,||||},,||}||||}}}}...{(({...}))){(({{{{(((({(({.{.(({((,,{((,,,(((({,{,.,(,{{,,....,,,})),,...})}}))),}}}},}},,,,,}}}}}..,|,||||,,,(((((.((((.,,....,.)))).))))).((((......)))),}..,}.,))}}),,),))))))))}},)))|||,|{{|,||,.,..,)),,)))).}))))))).)))).)))).))