Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr11_0647000

Sequence Length

211 nt

GC Content

0.3981

GCAGCGGAGUGAAGAGCCAAUUAUCUGGACAAUCCAUGCAAAAUGAACACUAGAUCUUCCUGAAUUACUUCACAUAAAACUGUUUUCUGGAUUUUAAUAAUUUAUUUUGAUAAUCUCUUUUCUCAAUUCCCCUGACUUUGAUGAUGCAAACAUAGCAUCAGUGGGGGUAGUGGAUAGGGUGGGGUGGGAAGUAAGUAGGAGAGGACUGAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-40.40 kcal/mol

Ensemble Metrics

Free Energy: -45.42

Frequency: 0.0003

Diversity: 54.81

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((..(((((..(((........)))..))..))).)))........((.(((.(((((((...(((((((.(((...(((.(.(((.(((((((((.........)))).))))).........(((.((((.(((.....(((((.......)))))))).)))).)))))).).)))...))).)))))))...)).)))))))).))

Thermodynamic Ensemble Prediction

(((..(((,(,.(((........)))..,}..))).)))........((.(((.(((((((,..(((((((.(((...{((.{.,,{,(((((,{{,.,,......}}}}.}}}}},...,.,|,,,,{((((.((,....{(((((.......))))))))})))).}}}))).),)))...))).))))))).}})),))))}))).))