Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr12_0309900

Sequence Length

364 nt

GC Content

0.3736

GUAUCUUGGAAAUAAAUCUAAUCGAGCUGUCAGCACACAGAUCAGAGAUGUGCCAUUCCUACCAAACUCUGGCCAAAUUGCAAGACCAUGCGUGAGAAAAUACUUGUUUUUAAGCCAUUAAAUUUUGAAAUUAUUAAUUAUGCAACAAUAGAUAACCAAAACAAAAUUUGGUAUCAGAAAGGAGGCUCUGCUAUAACAAAAACUCAAAAUAUGUACGGUUUGGGUCCAGGUGGUAGACAACAGCUAGAAGACUGCUGGUAAAGAUUUGAAAAACAGUAUAGAAAUGUUACUGGUGGCUGAAGAAAUGGAGACCUAAGAAAAAGCAGCAGACCCGUUUCAUACAGUAACAUGGAGAACAGAAAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-62.70 kcal/mol

Ensemble Metrics

Free Energy: -71.22

Frequency: 0.0000

Diversity: 112.00

Structure Visualization

Structure Prediction

MFE Structure Prediction

((...(((((......)))))((.((((((..((((((........).))))).....((((((...(((((((((((((........(((((((...((((.((...(((((....)))))......)).))))..)))))))......((((.(((((......)))))))))......(((..(.((......)).)..)))..........))))))))..)))))))))))...)))))).))...((((((.(..............(((((.........)))))..((((..........)).))........).))))))))((.((((....................))))))

Thermodynamic Ensemble Prediction

((.,,((({{...,,,|||},,(.((({(({.((((((........}.))))).....((((((...(((((((((((((,,......(((((({,..{{{..,,||||||{{|,,.|,,.,,{|{||...,,,,..}|||}},......(((,{(((((......)))))))))......{{|,,}.||......,,....}}}......,},.,))))))),.)))))))))))...,|||},.,..,,|{||||},..,,,}}},.....({(((,.....||,})))}|{|{(({..,,,,{{{.,.,}..........}}}},,,}||}||||.,.}},,..,.}},..,,}.,,,,}}