Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr13_0132400

Sequence Length

555 nt

GC Content

0.3892

UUUUUCCUCCUGUUUGGGUAUUUUAUCAAAGAGAAAUGAUGUACUACUAUUGGGAAGGUCUUCUUUCUCAUCUGCUAAUGUUAUCAAUGGACCAUUAUCCUUUUCUUCAUUUUUUUUAAUGAUACCAACACUUCCAUGUACAUUGUUCUGGAGUUUCUCAACAGCAGCACUAUAUACAUUAUCCAACAGAGAUUCAACCUCCACAAGGGCACCAUUCUCUCCACCUACUAAAGUCUCCGGUGAUAAAUCCAUAUCAUCGAGCUUUACUUCUGUUGCUUCCACUUUCUCUGCUUUUAUAUCUACUAAAAGAUCAUGUACUUCCACAUGUACACCACUUCCUGGUCUAUCUGAAUUUCCAAGAAUAUCAUCUGACACUUUUGUUGACAUGAGUAAGUCUCGAGUAUCUGUGCUGACAGGGUAAUCGGUCUCACUUUCUGGGCUCUGGCUUUGUGAAAGAUCUUCUAUCUCUCGAAUUUCCAUUCCACCUUUUGCUCCUGUUGUCUGUGAUGAAAGACCAGAGAUGGUGCUCACAUUCCCUUUCUUUCCCUUUUUAAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-100.80 kcal/mol

Ensemble Metrics

Free Energy: -114.73

Frequency: 0.0000

Diversity: 153.86

Structure Visualization

Structure Prediction

MFE Structure Prediction

.........((.(((((........))))).)).((((((((((......((((((((....))))))))..................(((......)))......(((((......)))))...............))))))))))..((((.........(((((((..................(((((.....(((......)))......)))))........(((((.(((.(((((((......)))))))))))))))....)))))))........)))).((((((.......))))))..(((((......)))))..(((((..(((((((((.(((.........)))...(((((.(((..........((.((((.....)))).)).........((((((((((..(((..........(((...(((.....(((.((((.....)))).))).....))).))))))..)))).)))))))))...))))).))))))).))))))).............................

Thermodynamic Ensemble Prediction

......,{,{((,,,(((({...((({((((((((((((.{.........((((((((....))))))))...,....,|,.......(({......})}......}))))))))}}..)))}}...........{((((.{{.((.(((..(({....,}),,})),)}.,}.))))}}))))))))}||,......,|.....,||((((((,{{{{{........(((((.((,{(((((((......))))))))))))))).....|,,|,.........,,,.,{{{{{{.......}}}})),...(((((........))))|,,,.....||||{{.,,{{,....,,.,)),..|||,,.((({....,}},,{||.|||,,,},},|}|}||,,.,|},,{(((((((((..(({.........,(((...(((.....{((.((({.....}))).})),,...))).))})))..)))).))))))|||,..}},},.))))}))))))))))),,..........................