Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr13_0133300

Sequence Length

355 nt

GC Content

0.3183

GUAAAUAUUUAAGUAAAUUUUUUCUAUGGACAAAAUGGCUAGCAAUAAACUUCUCAAUUUCAUAAUUAAAAGCUUAUGACAUUCAAAGUUGACGUAGUAUAUGUGACUGAAUACAUGCUGUUGGAAUUUCCCGUGUUAUUUUAAAAAUCCAUUUAGGUACAGUCUCUUCAGGUAUUAUCAAAAACUGUUAAGGGUUAUUAUGAGACAAACUUGUGGAUGUGGAUAUUACUUCCUGGUGGCAACAAGAUUCCAAUAUUUAGUGGUUGUUUCCUUUUAACAGAUGAAUACGGAAAAUGUAUAGAGGCCAAUUCAAUCUUUUGCUAUCUUAAACACUGGUGUUUUUGUGUGUGUGUGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-52.00 kcal/mol

Ensemble Metrics

Free Energy: -61.12

Frequency: 0.0000

Diversity: 135.63

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.........(((..(((((.((....)).))))).))).......(((((...(((.((((((........)))))).)))..))))).(((((...))))).))...((((((((....(((((..((.(((((.........((((((..((((...(((((..(((.............)))..............)))))..))))))))))..(((.......))).((((((((.((((((((..((((((...((((........))))...)))))).))).........(((.....))).)))))))))))))...))))).)).)))))...))))))))..

Thermodynamic Ensemble Prediction

,..,{,{,....,...||,|,..{{{{{.((({{{..(((((.....,{({{...{((.((((((........)))))).}}}..})))|,{.{(({{{,,,,,{{.{{{((,,,,(({.,{(,,(({{.({(((((..,......{{{{{,..{(((,..{{{{{....,||,,,,.,.....{{|,{{{{|{.......|||||,.|||,,|||||{{(((.......}||.{{,||{|{.,||{{|}},.}}}}}}..}}}}}}}}}}}}})))}}}.,,})))})).}},).,.}}|,}}}..}}}}}.)),,,)))))),,..,,,,)}))}..)))))).)))),},,.