Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr13_0133400

Sequence Length

353 nt

GC Content

0.3173

GUAAAUAUUUAAGUAAAUUUUUUCUAUGGACAAAAUGGCUAGCAAUAAACUUCUCAAUUUCAUAAUUAAAAGCUUAUGACAUUCAAAGUUGACGUAGUAUAUGUGACUGAAUACAUGCUGUUGGAAUUUCCCGUGUUAUUUUAAAAAUCCAUUUAGGUACAGUCUCUUCAGGUAUUAUCAAAAACUGUUAAGGGUUAUUAUGAGACAAACUUGUGGAUGUGGAUAUUACUUCCUGGUGGCAACAAGAUUCCAAUAUUUAGUGGUUGUUUCCUUUUAACAGAUGAAUACGGAAAAUGUAUAGAGGCCAAUUCAAUCUUUUGCUAUCUUAAACACUGGUGUUUUUGUGUGUGUGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-52.40 kcal/mol

Ensemble Metrics

Free Energy: -61.59

Frequency: 0.0000

Diversity: 113.54

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((..........))))...(((((.((((((..(((((.....(((((...(((.((((((........)))))).)))..)))))...((((((.....((.(((((....(((.(((..((((.(((((((..................(((((.(......)..)))))........((((((((((.......(((((((.((..((((((((((........((....)).........))).)))))))..)))))))))))))))))))...))))))).))))...))).)))..))))).))...))))))........)))))..)))))).)))).).

Thermodynamic Ensemble Prediction

..(((,,{,.....},))}),,.{((((.((((((..(((((.....,{(({...(((.((((((........)))))).}}}..})))|{{.((((((...,.((.(((({...,(((.,{(,.((({.({(((((,,,.,.,,.,{{{,,.,{(((,..{{{{{....,||,,},,,.....(({{{{{{{{.......|||||,,|||.,|||||{{(((.......|||.,,.||,|{.,,,,,}}},,})))}}..}))))))})))))))))}).,,))))))).}}})...}}|,}}}..})))).)).,,)))))),,,.....)))))..)))))).)))).}.