Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_chr14_0145200

Sequence Length

532 nt

GC Content

0.3722

CCACUGCACUCAGCCUAGAAUCUCCUUGUCAAUUUCUACAAAAAGACUGCUGGGAUCUUGGUUGGGAUUGCUGUAACCUAUUUCUUGAGAGAGAGAGUUCCAGAAAAUAAACUCGGAUAAUAUUUUUGUUUUGUUUUUCCUUAAAUCCCCCAGUAAUUCUGACGAUUAAACAGAUUUGGGUAACACAUACACACUCUCUCUUUCACCACCCUCGGGAUUCUACAAUUAUUAACUCAUAUACCACCAUUUUUUUCAAAAAUAUUACUACCCUGUUAUUAACACACAGUAAGCAUUCACUAAAUAUUAGAAAUAAAUCUUGCUGGGAACCACUAGACACAGAAAAGGUAUAUUUAAAUUUGCAGUCUAAGGCAAGAGUUACCAAUGAAUACAGAAAUUGGUGGGUUAAAUUUACUGAGGAACAGCAUAUUUACACAGUCUGGAAUUAUGUCCCUACAAAUUACUUAUUACAAAAGGAAAAAGAGGCCAGGAGCAGUGACUCACGCCUGUAAUACCGACAGUUUGGGAGGCCGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-107.50 kcal/mol

Ensemble Metrics

Free Energy: -119.27

Frequency: 0.0000

Diversity: 128.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((((.((..((((......((((((((..............)))((..(((((.....((.((((((.(((((.........(((((((((((((....(((((((((..((((.......)))).)))))))))..........(((((....((((.........)))).)))))............)))))))))))))....((((((.....................((..((((((.((((((((......(((((....((((...))))...))))).......((((...)))).......(((((((((......)))).)).)))...((((..((.....((((........))))))..))))..))))....)))).))))))..))......))))))..........))))))))))).)).....)))))..))...............))))).....))))..)).)))))).(((..((((.(...((.....))...).)))).)))

Thermodynamic Ensemble Prediction

.((((((.((({(((.{{,.{{(({,.(((..,,{.....,,..))),,..||||}}}.}}}}}||,,((((((...........(((((((((((((....((((({{((..{(((.......}}}),})}}})))},.........((((,.,,.((((.........)))),)))))............)))))))))))))....(((((({{{,.......,.........{(..((((((.((((({{,..,,,,{,,({...,(((,...,,,,..,|||||{.,,,..(({,...,))).......||||||||{......}}}}.}),)),...|{{|,||||....((((........)))))}.,}}}}..}}},...})))).))))))..)},.....)))))).}))))}..........,|||{{..{{...||||....................})))....}),,)}))).)))))).(((..((((.(...{(.....))...).)))).)))